View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19778_high_1 (Length: 687)
Name: NF19778_high_1
Description: NF19778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19778_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 31032846 - 31032288
Alignment:
| Q |
1 |
ttgtgtcctaatcctttgatgggaatttgtactgattatcaatgtatatgtatgtaacggttaaagataagttgaaaattaattatatttacatgttata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31032846 |
ttgtgtcctaatcctttgatgggaatttgtactgattatcaatgtatatgtatataactgttaaagataagttgaaaattaattatatttacatgttata |
31032747 |
T |
|
| Q |
101 |
attcaaaggtgtttctacatttcaatctctttaatcgcttttttggtttcatttggtcttggtctagtttctcnnnnnnntaaatatgagagatgataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |
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| T |
31032746 |
attcaaaggtgtttctacatttcaatctctttaatcgcttttttggtttcatttggtcttggtctagttcctaaaaaaa--aaaaatgagagatgataaa |
31032649 |
T |
|
| Q |
201 |
tgatagtattttcttagttttattcaacgatatatattttcttcgttaactctatgaaattcatcgatctatttctataaggaacaatgtattagaagat |
300 |
Q |
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| T |
31032648 |
tgata---ttttcttagttttattcaacgatatatattttcttcgttaactctatgaaattcatcgatctatttctataaggaacaatgtattagaagat |
31032552 |
T |
|
| Q |
301 |
ttaaaagttaaccatgccaattgagaatcaaagtcaagatataggtgatgcgaacttttctaaaagcactttcagtataaacaaaccatttcgagaaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31032551 |
ttaaaagttaaccatgccaattgagaatcaaagtcaagatataggtgatgcgaacttttctaaaagcactttcagtataaacaaaccattgcgagaaaga |
31032452 |
T |
|
| Q |
401 |
gctctaaatgaggactaagtcgaacctaatttattttcattggaagttgtttttccagatgatatagatggtggatgatcatttccaacgtagaatttct |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31032451 |
gctctaaatgaggactaagtcgaacctaatttattttcattggaagttgtttttccagatgatatagatggtggatgatcatttccatcgtagaatttct |
31032352 |
T |
|
| Q |
501 |
gaatcttggactgatccaggatatagttgcttctaagttatcattttgtagttctgagtgattg |
564 |
Q |
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| T |
31032351 |
gaatcttggaccgatccaggatatagttgcttctaagttatcgttttgtagttctgagtgattg |
31032288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 559 - 672
Target Start/End: Complemental strand, 31031999 - 31031886
Alignment:
| Q |
559 |
tgattgattgctctgtattatatcgacacaagggggtgtgccgaataatttatactaaattatgtgttgaacattcgttaggattatttatattcgacgg |
658 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31031999 |
tgatagattgctctgtattatatcgacacaaggggatgtgccgaataatttatactaaattatgtgttgaacattcgttaggattatttatattcgacgg |
31031900 |
T |
|
| Q |
659 |
tgagtgtcgaagat |
672 |
Q |
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|||||||||||||| |
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| T |
31031899 |
tgagtgtcgaagat |
31031886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 28355618 - 28355680
Alignment:
| Q |
395 |
gaaagagctctaaatgaggactaagtcgaacctaatttattttcattggaagttgtttttcca |
457 |
Q |
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||||||||| ||| ||||| |||||||||||| ||||||||| ||| |||||||||||||| |
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| T |
28355618 |
gaaagagcttgaaaagaggagcaagtcgaacctagtttattttcgttgaaagttgtttttcca |
28355680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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