View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19778_high_2 (Length: 521)

Name: NF19778_high_2
Description: NF19778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19778_high_2
NF19778_high_2
[»] chr5 (3 HSPs)
chr5 (85-509)||(3626996-3627425)
chr5 (27-89)||(3627780-3627842)
chr5 (8-106)||(16087983-16088080)
[»] chr2 (3 HSPs)
chr2 (7-103)||(26973302-26973398)
chr2 (7-111)||(7504935-7505039)
chr2 (7-105)||(26968772-26968870)
[»] chr4 (2 HSPs)
chr4 (7-106)||(14059117-14059216)
chr4 (27-106)||(23544770-23544849)
[»] chr3 (2 HSPs)
chr3 (7-105)||(53726677-53726775)
chr3 (7-106)||(53731158-53731257)
[»] chr8 (4 HSPs)
chr8 (29-105)||(8263571-8263647)
chr8 (27-90)||(38643623-38643686)
chr8 (7-50)||(32791880-32791923)
chr8 (7-92)||(21419000-21419085)
[»] chr6 (1 HSPs)
chr6 (7-72)||(19229541-19229606)
[»] chr1 (1 HSPs)
chr1 (8-106)||(19033617-19033714)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 85 - 509
Target Start/End: Complemental strand, 3627425 - 3626996
Alignment:
Q  85 gtttacacatcagctacaacaagcttatggttgaaatgtaacgatagaaaaaattgaaaccaatccaaccaag------atggttaataaatttgtggag 178  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||      |||||||||||||||||||||    
T  3627425 gtttacacatgaggtacaacaagcttatggttgaaatgtaacgatagaaaaaattgataccaatccaaccaagggaatgatggttaataaatttgtggag 3627326  T
Q  179 tgcttaattaatgaccctcttaaaaagtaatgagtgaaaaagcacaaagtacagtgaaaatgaccccatgaaattttaacccccgtgcatccgattaaaa 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3627325 tgcttaattaatgaccctcttaaaaagtaatgagtgaaaaagca--aagtacagtgaaaatgagcccatgaaattttaacccccgtgcatccgattaaaa 3627228  T
Q  279 acatgcggccaagattcaaaagcaaacctgcaagtaacaccaaatgtaatgagcaatttttgtttccaaaattaatgaccc-ttgttgttttacgagaaa 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3627227 acatgcggccaagattcaaaagcaaacctgcaagtaacaccaaatgtaatgagcaatttttgtttccaaaattaatgaccccttgttgttttacgagaaa 3627128  T
Q  378 tgagacagataccacatgggtaattccaaaatcttcagaaggacaaaacaataatttccttcaaccatacggtagtaaaatccatttattatggcgccat 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3627127 tgagacagataccacatgggtaattccaaaatcttcagaaggacaaaacaataatttccttcaaccatacggtagtaaaatccatttattatggcgccat 3627028  T
Q  478 gtcgcttccactacttcctctcattctgattc 509  Q
    ||||||||||||||||||||||||||||||||    
T  3627027 gtcgcttccactacttcctctcattctgattc 3626996  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 3627842 - 3627780
Alignment:
Q  27 tgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgttta 89  Q
    ||||||| |||||| |||||||| |||||||| ||||| |||||||||||| |||||||||||    
T  3627842 tgttatttgaagttgcggttgctacgttattatttaaagttgcggtgttgcggttactgttta 3627780  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 16088080 - 16087983
Alignment:
Q  8 gaagttgcggtggttgcaatgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacacatcagctacaacaa 106  Q
    ||||||||||||| |||  ||||||| |||| | ||||||| | ||||||| || || |||||||||||| |||||||||||| |||||| ||||||||    
T  16088080 gaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttactgtttacgcatcaggtacaacaa 16087983  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 26973398 - 26973302
Alignment:
Q  7 tgaagttgcggtggttgcaatgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacacatcagctacaa 103  Q
    |||||||||||||| |||  |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||    
T  26973398 tgaagttgcggtggctgcggtgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttgcggttgctgtttacacatcaggtacaa 26973302  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 7505039 - 7504935
Alignment:
Q  7 tgaagttgcggtggttgcaatgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacacatcagctacaacaa 106  Q
    |||||||||||||| |||  |||||||||||||| ||||||||||||||||||||||| ||||||||||   ||| ||||||||||||||| ||||||||    
T  7505039 tgaagttgcggtggctgcggtgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttatggttgctgtttacacatcaggtacaacaa 7504940  T
Q  107 gctta 111  Q
     ||||    
T  7504939 tctta 7504935  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 26968870 - 26968772
Alignment:
Q  7 tgaagttgcggtggttgcaatgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacacatcagctacaaca 105  Q
    ||||||| |||||| |||  |||||||| ||||| |||||||||| || ||||||||| |||||||||||| ||| |||||||| |||||| |||||||    
T  26968870 tgaagttccggtggctgctgtgttattcaaagttgcggttgctgcattgttacttaaagttgcggtgttgcggttgctgtttactcatcaggtacaaca 26968772  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 14059117 - 14059216
Alignment:
Q  7 tgaagttgcggtggttgcaatgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacacatcagctacaacaa 106  Q
    |||||||||| ||  ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||  ||| ||||||||||||||| ||||||||    
T  14059117 tgaagttgcgatgactgcgatgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttgtggttgctgtttacacatcaggtacaacaa 14059216  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 23544770 - 23544849
Alignment:
Q  27 tgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacacatcagctacaacaa 106  Q
    |||| ||||||||| |||||||||||||||||| |||| |||||||||||| |||  ||||||||||| || ||||||||    
T  23544770 tgttgttcgaagttgcggttgctgcgttattacctaaagttgcggtgttgcggttgatgtttacacataaggtacaacaa 23544849  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 53726775 - 53726677
Alignment:
Q  7 tgaagttgcggtggttgcaatgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacacatcagctacaaca 105  Q
    ||||||||||||||||||  |||| ||| ||||| ||||||||| ||||||||||||| |||||||||||| ||| |||||||||||| || |||||||    
T  53726775 tgaagttgcggtggttgcggtgttcttcaaagttgcggttgctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataaggtacaaca 53726677  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 53731257 - 53731158
Alignment:
Q  7 tgaagttgcggtggttgcaatgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacacatcagctacaacaa 106  Q
    |||||||||||||| |||  |||| ||| ||||| ||||||||| ||||||||||||| |||||||||||| ||| |||||||||||| || ||||||||    
T  53731257 tgaagttgcggtggctgcggtgttcttcaaagttgcggttgctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataaggtacaacaa 53731158  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 8263571 - 8263647
Alignment:
Q  29 ttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacacatcagctacaaca 105  Q
    |||||||||||| ||||||||||||||||||||||| ||||| |||||| |||  |||||||||||||| |||||||    
T  8263571 ttattcgaagttgcggttgctgcgttattacttaaagttgcgatgttgcggttgttgtttacacatcaggtacaaca 8263647  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 38643686 - 38643623
Alignment:
Q  27 tgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttac 90  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| | ||||||    
T  38643686 tgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttgcggttgcggtttac 38643623  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 32791880 - 32791923
Alignment:
Q  7 tgaagttgcggtggttgcaatgttattcgaagttacggttgctg 50  Q
    |||||||||||||| |||| |||||||||||||| |||||||||    
T  32791880 tgaagttgcggtggctgcagtgttattcgaagttgcggttgctg 32791923  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 21419085 - 21419000
Alignment:
Q  7 tgaagttgcggtggttgcaatgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacac 92  Q
    ||||||||||| || |||  ||||||| ||||||  | ||| |||||||||| ||||| ||| |||||||| ||| ||||||||||    
T  21419085 tgaagttgcggcggctgcgttgttattggaagttgtgattgttgcgttattatttaaagttgtggtgttgcggttgctgtttacac 21419000  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 19229606 - 19229541
Alignment:
Q  7 tgaagttgcggtggttgcaatgttattcgaagttacggttgctgcgttattacttaaaattgcggt 72  Q
    |||||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||| |||||||    
T  19229606 tgaagttgcggtggctgcagtgttcttcgaagttgcggttgctgcgttattacttaaagttgcggt 19229541  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 19033714 - 19033617
Alignment:
Q  8 gaagttgcggtggttgcaatgttattcgaagttacggttgctgcgttattacttaaaattgcggtgttgcagttactgtttacacatcagctacaacaa 106  Q
    ||||||||||||| |||  ||||||| |||||| ||||||| | | ||||| ||||| |||  ||||||| |||||||||||| |||||| ||||||||    
T  19033714 gaagttgcggtggctgcgttgttatttgaagttgcggttgccg-gatattatttaaagttgtcgtgttgcggttactgtttacgcatcaggtacaacaa 19033617  T

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