View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19778_high_3 (Length: 244)

Name: NF19778_high_3
Description: NF19778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19778_high_3
NF19778_high_3
[»] chr8 (3 HSPs)
chr8 (17-144)||(23595125-23595252)
chr8 (17-144)||(23604047-23604174)
chr8 (17-144)||(21592931-21593058)
[»] chr2 (4 HSPs)
chr2 (17-144)||(9892337-9892464)
chr2 (17-144)||(22170165-22170292)
chr2 (24-144)||(29216359-29216479)
chr2 (24-144)||(29329658-29329778)
[»] chr7 (2 HSPs)
chr7 (24-141)||(3727891-3728008)
chr7 (88-144)||(27556046-27556102)
[»] chr5 (3 HSPs)
chr5 (17-144)||(39324546-39324673)
chr5 (94-144)||(21878105-21878155)
chr5 (207-244)||(28682853-28682890)
[»] chr1 (4 HSPs)
chr1 (17-144)||(27036052-27036179)
chr1 (87-136)||(2583190-2583239)
chr1 (94-144)||(16280254-16280304)
chr1 (94-144)||(21812989-21813039)
[»] chr6 (4 HSPs)
chr6 (17-144)||(34338296-34338423)
chr6 (56-136)||(13664374-13664454)
chr6 (72-136)||(27990599-27990663)
chr6 (95-142)||(8483814-8483861)
[»] scaffold0063 (1 HSPs)
scaffold0063 (67-144)||(63368-63445)
[»] chr4 (5 HSPs)
chr4 (56-144)||(20380421-20380509)
chr4 (94-144)||(1924856-1924906)
chr4 (95-142)||(34658092-34658139)
chr4 (91-120)||(19904868-19904897)
chr4 (207-244)||(34512005-34512042)
[»] scaffold0265 (1 HSPs)
scaffold0265 (94-144)||(19770-19820)
[»] scaffold0114 (1 HSPs)
scaffold0114 (95-142)||(3154-3201)
[»] scaffold0029 (1 HSPs)
scaffold0029 (94-144)||(129255-129305)
[»] scaffold0012 (1 HSPs)
scaffold0012 (94-144)||(55916-55966)
[»] scaffold0002 (1 HSPs)
scaffold0002 (94-144)||(307072-307122)
[»] scaffold0001 (1 HSPs)
scaffold0001 (94-144)||(20889-20939)
[»] chr3 (1 HSPs)
chr3 (207-244)||(20970304-20970341)
[»] scaffold0279 (1 HSPs)
scaffold0279 (88-144)||(12987-13043)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 23595125 - 23595252
Alignment:
Q  17 ccttatgacctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatg 116  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23595125 ccttatgacctaagggaaatgacttacttgctattgtcagtgcagtttgacttgacactctaccaagtgaattgaggcttgatttctttcgagatagatg 23595224  T
Q  117 tggatttccgaattacagatttccttga 144  Q
    ||||||||||||||||||||||||||||    
T  23595225 tggatttccgaattacagatttccttga 23595252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 23604047 - 23604174
Alignment:
Q  17 ccttatgacctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatg 116  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23604047 ccttatgacctaagggaaatgacttacttgctattgtcagtgcagtttgacttgacactctaccaagtgaattgaggcttgatttctttcgagatagatg 23604146  T
Q  117 tggatttccgaattacagatttccttga 144  Q
    ||||||||||||||||||||||||||||    
T  23604147 tggatttccgaattacagatttccttga 23604174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 21592931 - 21593058
Alignment:
Q  17 ccttatgacctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatg 116  Q
    |||||| ||||||||||||||| |||||||||| ||| ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21592931 ccttattacctaagggaaatgacttacttgctactgttagtgcggttttgcttgacactctaccaagtgaattgaggcttgatttctttcgagatagatg 21593030  T
Q  117 tggatttccgaattacagatttccttga 144  Q
    ||||||||| |||| |||||||||||||    
T  21593031 tggatttcctaattgcagatttccttga 21593058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 9892464 - 9892337
Alignment:
Q  17 ccttatgacctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatg 116  Q
    |||||| ||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  9892464 ccttattacctaagggaaatgacttacttgctactgttagtgcggtttgccttgacactctaccaagtgaatggaggcttgatttctttcgagatagatg 9892365  T
Q  117 tggatttccgaattacagatttccttga 144  Q
    ||||||||| ||||||||||||||||||    
T  9892364 tggatttcctaattacagatttccttga 9892337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 22170292 - 22170165
Alignment:
Q  17 ccttatgacctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatg 116  Q
    |||||| ||||||||||||||| |||||||||| | | ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||      
T  22170292 ccttattacctaagggaaatgacttacttgctactattagtgcggttttgcttgacactctaccaagtgaattgaggcttgatttctttcgagatagaga 22170193  T
Q  117 tggatttccgaattacagatttccttga 144  Q
    ||||||||| ||||||||||||||||||    
T  22170192 tggatttcctaattacagatttccttga 22170165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 29216359 - 29216479
Alignment:
Q  24 acctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatgtggattt 123  Q
    |||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||||||| |||| || ||||||||||||| |||||||||||||||||    
T  29216359 acctaagggaaatgaattacttgctactgttagtgtggtttggcttgacactctaccaagtgaatggatgcttgatttcttttgagatagatgtggattt 29216458  T
Q  124 ccgaattacagatttccttga 144  Q
    || || |||||||||||||||    
T  29216459 cctaactacagatttccttga 29216479  T

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Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 29329658 - 29329778
Alignment:
Q  24 acctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatgtggattt 123  Q
    |||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||||||| |||| || ||||||||||||| |||||||||||||||||    
T  29329658 acctaagggaaatgaattacttgctactgttagtgtggtttggcttgacactctaccaagtgaatggatgcttgatttcttttgagatagatgtggattt 29329757  T
Q  124 ccgaattacagatttccttga 144  Q
    || || |||||||||||||||    
T  29329758 cctaactacagatttccttga 29329778  T

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Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 3728008 - 3727891
Alignment:
Q  24 acctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatgtggattt 123  Q
    ||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3728008 acctaagggaaatgacttacttgctactgttagtgcggtttggcttgacactctaccaagtgaattgaggcttgatttctttcgagatagatgtggattt 3727909  T
Q  124 ccgaattacagatttcct 141  Q
    || |||||||||||||||    
T  3727908 cctaattacagatttcct 3727891  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 27556102 - 27556046
Alignment:
Q  88 ttgaggcttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    |||||||||||||||| ||| |||||||||||| |||| || || ||||| ||||||    
T  27556102 ttgaggcttgatttctatcgggatagatgtggacttccaaactagagattcccttga 27556046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 39324673 - 39324546
Alignment:
Q  17 ccttatgacctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatg 116  Q
    |||||| ||||||||||||||| |||||||||| | | |||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  39324673 ccttattacctaagggaaatgacttacttgctactattagtgtggtttggcttgacattctaccaagtgaattgaggcttgatttctttcgagatagatg 39324574  T
Q  117 tggatttccgaattacagatttccttga 144  Q
    ||||||||| ||||||||||||||||||    
T  39324573 tggatttcctaattacagatttccttga 39324546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 21878155 - 21878105
Alignment:
Q  94 cttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    |||||||||||| |||||||||||||  ||||||| |||||||||||||||    
T  21878155 cttgatttctttagagatagatgtggtcttccgaactacagatttccttga 21878105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 28682890 - 28682853
Alignment:
Q  207 gtctagtcccccctccttttgtagatatttttcccctt 244  Q
    |||||||||||||||||||||||  |||||||||||||    
T  28682890 gtctagtcccccctccttttgtatttatttttcccctt 28682853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 27036179 - 27036052
Alignment:
Q  17 ccttatgacctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatg 116  Q
    |||||| ||||||||||||||| |||||||||| ||  ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| ||||||||||    
T  27036179 ccttattacctaagggaaatgacttacttgctactgctagtgcggtttggcttgacactcttccaagtgaattgaggcttgattttttttgagatagatg 27036080  T
Q  117 tggatttccgaattacagatttccttga 144  Q
    ||||||||| ||||||||||||||||||    
T  27036079 tggatttcctaattacagatttccttga 27036052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 2583239 - 2583190
Alignment:
Q  87 attgaggcttgatttctttcgagatagatgtggatttccgaattacagat 136  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  2583239 attgaggcttgatttctttcgagataaatgtggatttactaattacagat 2583190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 16280254 - 16280304
Alignment:
Q  94 cttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    |||||||||||| |||||||||||||  ||||||| |||||||||||||||    
T  16280254 cttgatttctttagagatagatgtggtcttccgaactacagatttccttga 16280304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 21812989 - 21813039
Alignment:
Q  94 cttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    |||||||||||| |||||||||||||  ||||||| |||||||||||||||    
T  21812989 cttgatttctttagagatagatgtggtcttccgaactacagatttccttga 21813039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 34338423 - 34338296
Alignment:
Q  17 ccttatgacctaagggaaatgaattacttgctattgtcagtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatg 116  Q
    |||||| ||||||||||||||  |||||||||| ||| ||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34338423 ccttattacctaagggaaatgctttacttgctactgttagtgcggttttgtttgacactctaccaagtgaattgaggcttgatttctttcgagatagatg 34338324  T
Q  117 tggatttccgaattacagatttccttga 144  Q
    || |||| | ||||||||||||||||||    
T  34338323 tgaattttctaattacagatttccttga 34338296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 13664454 - 13664374
Alignment:
Q  56 gtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatgtggatttccgaattacagat 136  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  13664454 gtgcggtttgacttgacactctaccaagtgaattgaggcttgatttctttcgggatagatgtggatttcctaattacagat 13664374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 27990599 - 27990663
Alignment:
Q  72 cactctaccaagagaattgaggcttgatttctttcgagatagatgtggatttccgaattacagat 136  Q
    |||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  27990599 cactctaccaagtgatttaaggcttgatttctttcgggatagatgtggatttcctaattacagat 27990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 8483861 - 8483814
Alignment:
Q  95 ttgatttctttcgagatagatgtggatttccgaattacagatttcctt 142  Q
    ||||||| ||||| |||||||||||| |||| ||||||||||||||||    
T  8483861 ttgatttttttcgtgatagatgtggacttcctaattacagatttcctt 8483814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 63368 - 63445
Alignment:
Q  67 cttgacactctaccaagagaattgaggcttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    ||||||||||| ||||| | ||||| ||||||||| |||||  ||| |||||||||||| ||||||||||||||||||    
T  63368 cttgacactcttccaagtgtattgaagcttgatttatttcggaatacatgtggatttcctaattacagatttccttga 63445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 20380509 - 20380421
Alignment:
Q  56 gtgcggtttgacttgacactctaccaagagaattgaggcttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    |||||||||| ||||||||||| ||||  || |||||||||| ||||||||| |||||||||||| |||| || |||| |||| |||||    
T  20380509 gtgcggtttggcttgacactcttccaaatgatttgaggcttgctttctttcgggatagatgtggacttcctaactacaaattttcttga 20380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 1924906 - 1924856
Alignment:
Q  94 cttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    |||||||||||| |||||||||||||  ||||||| |||||||||||||||    
T  1924906 cttgatttctttagagatagatgtggtcttccgaactacagatttccttga 1924856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 34658139 - 34658092
Alignment:
Q  95 ttgatttctttcgagatagatgtggatttccgaattacagatttcctt 142  Q
    ||||||| ||||| |||||||||||| |||| ||||||||||||||||    
T  34658139 ttgatttttttcgtgatagatgtggacttcctaattacagatttcctt 34658092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 19904897 - 19904868
Alignment:
Q  91 aggcttgatttctttcgagatagatgtgga 120  Q
    ||||||||||||||||||||||||||||||    
T  19904897 aggcttgatttctttcgagatagatgtgga 19904868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 34512005 - 34512042
Alignment:
Q  207 gtctagtcccccctccttttgtagatatttttcccctt 244  Q
    |||||||||||||||||||||||  |||||||||||||    
T  34512005 gtctagtcccccctccttttgtaattatttttcccctt 34512042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 19820 - 19770
Alignment:
Q  94 cttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    |||||||||||| |||||||||||||  ||||||| |||||||||||||||    
T  19820 cttgatttctttagagatagatgtggtcttccgaactacagatttccttga 19770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 3201 - 3154
Alignment:
Q  95 ttgatttctttcgagatagatgtggatttccgaattacagatttcctt 142  Q
    ||||||| ||||| |||||||||||| |||| ||||||||||||||||    
T  3201 ttgatttttttcgtgatagatgtggacttcctaattacagatttcctt 3154  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 129255 - 129305
Alignment:
Q  94 cttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    ||||| |||||| |||||||||||||  ||||||| |||||||||||||||    
T  129255 cttgacttctttagagatagatgtggtcttccgaactacagatttccttga 129305  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 55966 - 55916
Alignment:
Q  94 cttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    |||||||||||| |||||||||||||  | ||||| |||||||||||||||    
T  55966 cttgatttctttagagatagatgtggtctcccgaactacagatttccttga 55916  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 307072 - 307122
Alignment:
Q  94 cttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    ||||| |||||| |||||||||||||  ||||||| |||||||||||||||    
T  307072 cttgacttctttagagatagatgtggtcttccgaactacagatttccttga 307122  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 20939 - 20889
Alignment:
Q  94 cttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    |||||||||||| |||||||||||||| | ||||| |||||||| ||||||    
T  20939 cttgatttctttagagatagatgtggactcccgaactacagattcccttga 20889  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 20970341 - 20970304
Alignment:
Q  207 gtctagtcccccctccttttgtagatatttttcccctt 244  Q
    |||||||||||||||||||||||  |||||||||||||    
T  20970341 gtctagtcccccctccttttgtaattatttttcccctt 20970304  T

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Target: scaffold0279 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 12987 - 13043
Alignment:
Q  88 ttgaggcttgatttctttcgagatagatgtggatttccgaattacagatttccttga 144  Q
    |||||||||||||||| ||| |||||||||||| |||| || || ||||| ||||||    
T  12987 ttgaggcttgatttctatcgggatagatgtggacttccaaactagagattcccttga 13043  T

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