View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19779_high_1 (Length: 572)
Name: NF19779_high_1
Description: NF19779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19779_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 556
Target Start/End: Complemental strand, 21941181 - 21940638
Alignment:
| Q |
13 |
gagatattgttgaaagacacattgagaagtagtaaacttgatgaactactaaacttttcaggtatgaggccattgaacttattattagataaatctacaa |
112 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||| |
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| T |
21941181 |
gagatattgttgaaagacacgttgagaagttgtaaacttgatgaactaccaaacttttcagggatgaagccattgaacttattgttagataaatctacaa |
21941082 |
T |
|
| Q |
113 |
tttcaagaatatggatatttgcaagctcctcaggtattggacctgtcaaattattttcggataatttgattgtcacaagagcatgacatttcgaaacact |
212 |
Q |
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||||||||||| ||||| |||||||||||||||||||| | |||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
21941081 |
tttcaagaatagggatacttgcaagctcctcaggtatttggcctgtcaaattattgtcagataattcgattgtcacaagagcttgacatttcgaaacact |
21940982 |
T |
|
| Q |
213 |
ttttgggattgttccatacaagttgtttctacctagatcaattgttgaaattgatttgcaagactcaaatgaaggaagattgcctaaaagaccacaagaa |
312 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21940981 |
ttttgggattgttccagacaagttgtttctaccaagatcaactgttgaaattgatttgcaggactcaaatgaaggaagattgcctaaaagaccacaagaa |
21940882 |
T |
|
| Q |
313 |
gaagctgagaaattttgaagttgcggcatagaccaaatttgtgaagggatatttcctcctaatttcatattataagagacattgaaatactccaatcgag |
412 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||| ||| |
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| T |
21940881 |
gatgctgagaaattttgaagttgcggcaaagaccaaatttgtgaagggatttttcctcctaattgcatattacaagacacattgaaatactccaattgag |
21940782 |
T |
|
| Q |
413 |
tagctagagaaatatctaaaggaatcccaccaacaaaattgttctttgacaaatcaacatatgcaatatgaggaagatggctgaattttaaaggaatctc |
512 |
Q |
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| T |
21940781 |
tagcttgagaaatatctaagggaataccaccaacaaaattgttccatgacaaatcaacatatgtgatatcaggaagatggttgaagtttaaataaatctc |
21940682 |
T |
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| Q |
513 |
tcctgagaatgaattatcttctatgcgaagacggacaagggaag |
556 |
Q |
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| T |
21940681 |
tcctgagaatgaattatcttctaagcgaagacggacaagggaag |
21940638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 10801135 - 10801523
Alignment:
| Q |
13 |
gagatattgttgaaagacacattgagaagtagtaaacttgatgaactactaaacttttcaggtatgaggccattgaacttattattagataaatctacaa |
112 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10801135 |
gagatattgttgaaagacacgttgagaagttttaaacttgatgaacttccaaacttttcaggtatgaggccattgaaattattattagataaatctacaa |
10801234 |
T |
|
| Q |
113 |
tttcaagaatatggatatttgcaagctcctcaggtattggacctgtcaaattattttcggataatttgattgtcacaagagcatgacatttcgaaacact |
212 |
Q |
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||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| || ||||||| |||| ||| |||||| ||||||||||||||||| |
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| T |
10801235 |
tttcaagaatagggatatatgcaagctcctcaggtatttgacctgtcaaattattgtcagataattcgattatcataagagcttgacatttcgaaacact |
10801334 |
T |
|
| Q |
213 |
ttttgggattgttccatacaagttgtttctacctagatcaattgttgaaattgatttgcaagactcaaatgaaggaagattgcctaaaagaccacaagaa |
312 |
Q |
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|||||| ||||||||| | |||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
10801335 |
ttttggtattgttccagataagttgtttctaccaagacgaattgttgaaattgatttgcatgactcaaatgaaggaagattgcctaaaataccacaagaa |
10801434 |
T |
|
| Q |
313 |
gaagctgagaaattttgaagttgcggcatagaccaaatttgtgaagggatatttcctcctaatttcatattataagagacattgaaata |
401 |
Q |
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| T |
10801435 |
tatgctgagaaattttgaagttgtggcatagaccaaatttgtgaagggatgtttcctcctaattgcatattataagagacactgaaata |
10801523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 10800991 - 10801135
Alignment:
| Q |
13 |
gagatattgttgaaagacacattgagaagtagtaaacttgatgaactactaaacttttcaggtatgaggccattgaacttattattagataaatctacaa |
112 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
10800991 |
gagatattgttgaaagacacattgagaagttataaacttgatgaactaccaaacttttcaggtatgaggccattgagattattgttagataaatctacac |
10801090 |
T |
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| Q |
113 |
tttcaagaatatggatatttgcaagctcctcaggtattggacctg |
157 |
Q |
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||||||||||| |||||| ||| |||||||| ||||||| ||||| |
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| T |
10801091 |
tttcaagaatagggatatctgccagctcctcgggtattgaacctg |
10801135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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