View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19779_high_3 (Length: 331)
Name: NF19779_high_3
Description: NF19779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19779_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 40750410 - 40750123
Alignment:
| Q |
11 |
tccaagaatatctctaaacccactagaattaccaaccatagttgcacttctactactacttggatcaaaattctcatgctgcttcattttctgattaatg |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40750410 |
tccaagaaaatctctaaacccactagaattaccaaccatagttgcacttctactactacttggatcaaaattctcatgctgcttcattttctgattaatg |
40750311 |
T |
|
| Q |
111 |
accatattaacctcatcatggtttttgtttaaactcgttgtttgtgtagaggatgaactcattacaccaaaacttccactaaaaatggaaggattagtac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40750310 |
accatattaacctcatcatggtttttgtttaaactcgttgtttgtgtagaggatgaactcattacaccaaaacttccactaaatatggaaggattagtac |
40750211 |
T |
|
| Q |
211 |
tgcttcttgttgaacctatttgagctgctttctgaagaagtgcagtagctgacattggagtattagtttgagccatttgtataacatc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40750210 |
tgcttcttgttgaacctatttgagctgctttctgaagaagtgcagtagctgacattggagtattagtttgagccatttgtataacatc |
40750123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 28495290 - 28495353
Alignment:
| Q |
205 |
tagtactgcttcttgttgaacctatttgagctgctttctgaagaagtgcagtagctgacattgg |
268 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
28495290 |
tagtattgcttctagttgaacccatttgagctgctttttgcagaagagcagtagctgacattgg |
28495353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 50785480 - 50785528
Alignment:
| Q |
219 |
gttgaacctatttgagctgctttctgaagaagtgcagtagctgacattg |
267 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
50785480 |
gttgcacccatttgagcagctttctgaagaagtgcagttgctgacattg |
50785528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University