View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19779_high_5 (Length: 249)

Name: NF19779_high_5
Description: NF19779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19779_high_5
NF19779_high_5
[»] chr2 (15 HSPs)
chr2 (1-105)||(9083800-9083904)
chr2 (155-240)||(9083665-9083750)
chr2 (155-240)||(9078195-9078280)
chr2 (155-240)||(10846380-10846465)
chr2 (2-105)||(9078365-9078473)
chr2 (157-240)||(10541361-10541444)
chr2 (6-105)||(10855984-10856083)
chr2 (155-240)||(10857021-10857106)
chr2 (155-240)||(27964979-27965064)
chr2 (155-240)||(28107095-28107180)
chr2 (6-34)||(10458441-10458469)
chr2 (6-34)||(10484517-10484545)
chr2 (6-34)||(10502473-10502501)
chr2 (6-34)||(10502768-10502796)
chr2 (6-34)||(10540059-10540087)
[»] chr1 (1 HSPs)
chr1 (6-34)||(24050143-24050171)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 9083904 - 9083800
Alignment:
Q  1 cccaccaaatcatggtgaaaatctaaaaactaacatatacctcatcattatacaacccaaacaaaccacgaacctgcatttcgagagtagaaagacttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9083904 cccaccaaatcatggtgaaaatctaaaaactaacatatacctcatcattatacaacccaaacaaaccacgaacctgcatttcgagagtagaaagacttta 9083805  T
Q  101 gccac 105  Q
    |||||    
T  9083804 gccac 9083800  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 9083750 - 9083665
Alignment:
Q  155 ggagccttaaacttacctcgaacttcctgctagtgtcaacgtcagtaataaaatctcccttccgaaggacaccctcatatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9083750 ggagccttaaacttacctcgaacttcctgctagtgtcaacgtcagtaataaaatctcccttccgaaggacaccctcatatattctt 9083665  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 9078280 - 9078195
Alignment:
Q  155 ggagccttaaacttacctcgaacttcctgctagtgtcaacgtcagtaataaaatctcccttccgaaggacaccctcatatattctt 240  Q
    |||||||||||||||| || | |||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  9078280 ggagccttaaacttacttcaagcttcttgccagtgtcaacatcagtaataagatctcccttccgaaggacaccctcatatattctt 9078195  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 10846380 - 10846465
Alignment:
Q  155 ggagccttaaacttacctcgaacttcctgctagtgtcaacgtcagtaataaaatctcccttccgaaggacaccctcatatattctt 240  Q
    ||||||||||||||||||||||| || ||| ||||| |||||  ||||||||||| |||||||||| |||||||||||||||||||    
T  10846380 ggagccttaaacttacctcgaacgtcttgccagtgttaacgtttgtaataaaatcccccttccgaatgacaccctcatatattctt 10846465  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 9078473 - 9078365
Alignment:
Q  2 ccaccaaatcatggtgaaaatctaaaaactaacatatacctcatc------attatacaacccaaacaaaccacgaacctgcatttcgagagtagaaaga 95  Q
    ||||||| |||||||||||||||||||||||||||||||||||||      |||||||||||||| ||||| ||||| ||||| ||| ||| ||||||||    
T  9078473 ccaccaagtcatggtgaaaatctaaaaactaacatatacctcatcattaatattatacaacccaagcaaacgacgaatctgcaattccaga-tagaaaga 9078375  T
Q  96 ctttagccac 105  Q
    ||| ||||||    
T  9078374 cttcagccac 9078365  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 10541361 - 10541444
Alignment:
Q  157 agccttaaacttacctcgaacttcctgctagtgtcaacgtcagtaataaaatctcccttccgaaggacaccctcatatattctt 240  Q
    |||||||||||||||| |||| || ||| ||||| | | |  |||||||||||||||||||||| |||||||||||| ||||||    
T  10541361 agccttaaacttaccttgaacgtcttgccagtgttatcatttgtaataaaatctcccttccgaatgacaccctcatagattctt 10541444  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 10855984 - 10856083
Alignment:
Q  6 caaatcatggtgaaaatctaaaaactaacatatacctcatcattatacaacccaaacaaaccacgaacctgcatttcgagagtagaaagactttagccac 105  Q
    ||||||||||||||||| ||||||||||| |  ||||||||||||  |||||||| ||||  | ||||||||||||  |||| |||||| ||| ||||||    
T  10855984 caaatcatggtgaaaatttaaaaactaacctccacctcatcattacgcaacccaatcaaatgaggaacctgcatttgcagagaagaaaggcttcagccac 10856083  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 10857021 - 10857106
Alignment:
Q  155 ggagccttaaacttacctcgaacttcctgctagtgtcaacgtcagtaataaaatctcccttccgaaggacaccctcatatattctt 240  Q
    ||||||||||||||||||| ||| || ||| |  || || ||| |||||||||||||||||||||| |||||| ||||| ||||||    
T  10857021 ggagccttaaacttacctcaaacgtcttgccaaagttaaggtctgtaataaaatctcccttccgaatgacaccttcatagattctt 10857106  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 27964979 - 27965064
Alignment:
Q  155 ggagccttaaacttacctcgaacttcctgctagtgtcaacgtcagtaataaaatctcccttccgaaggacaccctcatatattctt 240  Q
    ||||||||| ||||||||| ||| || ||  ||||| |||||  ||||||||||| |||||||||| ||| ||||| || ||||||    
T  27964979 ggagccttagacttacctcaaacgtcttgtcagtgttaacgtttgtaataaaatcccccttccgaatgacgccctcgtagattctt 27965064  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 28107180 - 28107095
Alignment:
Q  155 ggagccttaaacttacctcgaacttcctgctagtgtcaacgtcagtaataaaatctcccttccgaaggacaccctcatatattctt 240  Q
    ||||||||| ||||||||| ||| || ||  ||||| | |||  ||||||||||| ||||| |||| |||||||||||| ||||||    
T  28107180 ggagccttagacttacctcaaacgtcttgtcagtgttagcgtttgtaataaaatccccctttcgaacgacaccctcatagattctt 28107095  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 10458441 - 10458469
Alignment:
Q  6 caaatcatggtgaaaatctaaaaactaac 34  Q
    |||||||||||||||||||||||||||||    
T  10458441 caaatcatggtgaaaatctaaaaactaac 10458469  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 10484517 - 10484545
Alignment:
Q  6 caaatcatggtgaaaatctaaaaactaac 34  Q
    |||||||||||||||||||||||||||||    
T  10484517 caaatcatggtgaaaatctaaaaactaac 10484545  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 10502473 - 10502501
Alignment:
Q  6 caaatcatggtgaaaatctaaaaactaac 34  Q
    |||||||||||||||||||||||||||||    
T  10502473 caaatcatggtgaaaatctaaaaactaac 10502501  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 10502768 - 10502796
Alignment:
Q  6 caaatcatggtgaaaatctaaaaactaac 34  Q
    |||||||||||||||||||||||||||||    
T  10502768 caaatcatggtgaaaatctaaaaactaac 10502796  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 10540059 - 10540087
Alignment:
Q  6 caaatcatggtgaaaatctaaaaactaac 34  Q
    |||||||||||||||||||||||||||||    
T  10540059 caaatcatggtgaaaatctaaaaactaac 10540087  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 24050171 - 24050143
Alignment:
Q  6 caaatcatggtgaaaatctaaaaactaac 34  Q
    |||||||||||||||||||||||||||||    
T  24050171 caaatcatggtgaaaatctaaaaactaac 24050143  T

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