View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19779_high_7 (Length: 237)

Name: NF19779_high_7
Description: NF19779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19779_high_7
NF19779_high_7
[»] chr2 (9 HSPs)
chr2 (1-223)||(9083883-9084105)
chr2 (32-188)||(9078510-9078666)
chr2 (131-193)||(10457919-10457982)
chr2 (131-200)||(10501359-10501429)
chr2 (133-193)||(10512703-10512764)
chr2 (131-210)||(10467575-10467655)
chr2 (47-113)||(10894638-10894707)
chr2 (74-119)||(10845496-10845541)
chr2 (131-198)||(10538938-10539006)
[»] chr4 (1 HSPs)
chr4 (76-119)||(17733243-17733286)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9083883 - 9084105
Alignment:
Q  1 attttcaccatgatttggtgggtgttcccattaagtgttctgcatttctctttttaagttctaatcgggattctcggcaggtgattctagaggctcatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9083883 attttcaccatgatttggtgggtgttcccattaagtgttctgcatttctctttttaagttctaatcgggattctcggcaggtgattctagaggctcatgt 9083982  T
Q  101 tggagaaatagttggtgtaatccattctgaaccaggttctacttttctcttctctcaagcataagctgcatttcttgaattctacattgctctatttttt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9083983 tggagaaatggttggtgtaatccattctgaaccaggttctacttttctcttctctcaagcataagctgcatttcttgaattctacattgctctatttttt 9084082  T
Q  201 gtaggattgaaatctattaattg 223  Q
    |||||||||||||||||||||||    
T  9084083 gtaggattgaaatctattaattg 9084105  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 32 - 188
Target Start/End: Original strand, 9078510 - 9078666
Alignment:
Q  32 taagtgttctgcatttctctttttaagttctaatcgggattctcggcaggtgattctagaggctcatgttggagaaatagttggtgtaatccattctgaa 131  Q
    ||||| |||||||| | ||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | |    
T  9078510 taagttttctgcatatatctttttaaattctaatcgggattctcgacaggtgattctagaggctcatgctggagaaatagttggtgtaatccattcagga 9078609  T
Q  132 ccaggttctacttttctcttctctcaagcataagctgcatttcttgaattctacatt 188  Q
    |||| |||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  9078610 ccagtttctacttttctcttccctcaagcataagccacatttcttgaattctacatt 9078666  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 10457982 - 10457919
Alignment:
Q  131 accaggttctacttttctcttctctc-aagcataagctgcatttcttgaattctacattgctct 193  Q
    |||||||||||||||||||||||||| ||| ||| ||| |||||| ||||||||||||||||||    
T  10457982 accaggttctacttttctcttctctcaaaggatatgctacatttcctgaattctacattgctct 10457919  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 10501429 - 10501359
Alignment:
Q  131 accaggttctacttttctcttctctcaa-gcataagctgcatttcttgaattctacattgctctatttttt 200  Q
    ||||||||||||| || ||||||||||| ||||| ||  ||||||||||||||||||||||||| ||||||    
T  10501429 accaggttctactcttgtcttctctcaaagcatatgccacatttcttgaattctacattgctctttttttt 10501359  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 10512764 - 10512703
Alignment:
Q  133 caggttctacttttctcttctctc-aagcataagctgcatttcttgaattctacattgctct 193  Q
    |||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |||||    
T  10512764 caggttctacttttctcttctctcaaagcatatgctacatttattgaattctacatcgctct 10512703  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 10467655 - 10467575
Alignment:
Q  131 accaggttctacttttctcttctctc-aagcataagctgcatttcttgaattctacattgctctattttttgtaggattga 210  Q
    |||||||||||||||||||| ||||| ||||||| ||  |||||| |||| ||||||| ||||| ||||||||| ||||||    
T  10467655 accaggttctacttttctctactctcaaagcatatgccacatttcctgaactctacatagctctcttttttgtaagattga 10467575  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 10894638 - 10894707
Alignment:
Q  47 tctctttttaagttctaatcgggat---tctcggcaggtgattctagaggctcatgttggagaaatagtt 113  Q
    ||||||||||| ||||||| ||| |   ||||||||||||||||||||||||||||  ||||||||||||    
T  10894638 tctctttttaaattctaattgggttgcttctcggcaggtgattctagaggctcatgcgggagaaatagtt 10894707  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 10845541 - 10845496
Alignment:
Q  74 tcggcaggtgattctagaggctcatgttggagaaatagttggtgta 119  Q
    ||||||||| |||| ||||||||||| |||||||||||||| ||||    
T  10845541 tcggcaggtaattcaagaggctcatgctggagaaatagttgctgta 10845496  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 10539006 - 10538938
Alignment:
Q  131 accaggttctacttttctcttctctc-aagcataagctgcatttcttgaattctacattgctctatttt 198  Q
    |||||||| ||||||||||||||||| ||||||| |   |||||||||||| ||| |||||||| ||||    
T  10539006 accaggttttacttttctcttctctcaaagcatatgacacatttcttgaatactatattgctctttttt 10538938  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 17733286 - 17733243
Alignment:
Q  76 ggcaggtgattctagaggctcatgttggagaaatagttggtgta 119  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||    
T  17733286 ggcaggagattctagaggctcatgctggagaaatagttgctgta 17733243  T

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