View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19779_low_13 (Length: 228)
Name: NF19779_low_13
Description: NF19779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19779_low_13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39289823 - 39290050
Alignment:
| Q |
1 |
tcatcaggaacagcacaagttttgacacctaacaatcaagctaacactccccaattttcggagacattgaaatctgataccgtgaataatgacgatgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39289823 |
tcatcaggaacagcacaagttttgacacctaacaatcaagctaacactccccaattttcggagacattgaaatctgataccgtgaataatgacgatgtga |
39289922 |
T |
|
| Q |
101 |
ttagacctgatgatgcagagcttggagaagcagatcaagatgagcataaatctgaagatccattggataaatttcttcctcctccacccaaagataaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39289923 |
ttagacctgatgatgcagagcttggagaagcagatcaagatgagcataaatctgaagatccattggataaatttcttcctcctccacccaaagataaatg |
39290022 |
T |
|
| Q |
201 |
tttagaggagctacaagtaagtcctctt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39290023 |
tttagaggagctacaagtaagtcctctt |
39290050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University