View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19779_low_2 (Length: 526)
Name: NF19779_low_2
Description: NF19779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19779_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 22 - 509
Target Start/End: Complemental strand, 34797554 - 34797065
Alignment:
| Q |
22 |
attaccccctccctcaacttttgttgcacttgctataaaa-gtgtccaagttcattcaaaaatcagttcataaagtcacttcatttaatactaatgtagc |
120 |
Q |
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| T |
34797554 |
attaccccttccctcaacttttgttgcacttgctataaaaagtgtccaagttcattcaaaaatcagttcataaagtcacttcatttaatactaatgtagc |
34797455 |
T |
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| Q |
121 |
actctagtgttcaaaaggactagttaatcaacaaagacagagaacaagcctatagctactcagtactatgactcatttggtaatatgacacttagcatag |
220 |
Q |
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| T |
34797454 |
actctagtgttcaaaaggactagttaatcaacaaagacagagaacaagcctatagctacttagtactatgactcatttggtaatatgacacttagcatag |
34797355 |
T |
|
| Q |
221 |
ttcaatcaagcaatttcattataatcatctcaaatagtcaacttagacccctaagacttagacactgaataatatttctcaagattaatcaagatttctt |
320 |
Q |
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| T |
34797354 |
ttcaatcaagcaatttcattataatcatctcaaatggtcaacttagacccctaagacttagacactgaataatatttctgaagattaatcaagatttctt |
34797255 |
T |
|
| Q |
321 |
tccattttcagcactctctccaaaacagaactaaaccaaaatgaaacaaaaaacctcacctcactttcaggaaccaacaacacctgacaatacacctcat |
420 |
Q |
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| T |
34797254 |
tccattttcagcactctctccaaaacagaactaaaccaaaatgaaacaaaaaaccttacctcactttcaggaaccaacaacacctgacaatacacctcat |
34797155 |
T |
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| Q |
421 |
cgttcccttcctcagcctgcacaaacacacattctatgtcaaaacaataccaagcaaca--agaaccaacctataacaactttcacaagtt |
509 |
Q |
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| T |
34797154 |
cgttcccttcctcagcctgcacaaacacacattctatgtcaaaa-aataccaagcaacaacagaaccaaactataacaactttcacaagtt |
34797065 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 443
Target Start/End: Original strand, 4273981 - 4274050
Alignment:
| Q |
374 |
cctcacctcactttcaggaaccaacaacacctgacaatacacctcatcgttcccttcctcagcctgcaca |
443 |
Q |
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|||||||| | |||||||||||||||| || || |||||||| ||||| ||||||||||||||| |||| |
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| T |
4273981 |
cctcacctgattttcaggaaccaacaagacttggcaatacacttcatcactcccttcctcagcctacaca |
4274050 |
T |
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