View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19779_low_3 (Length: 341)
Name: NF19779_low_3
Description: NF19779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19779_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 14598900 - 14598587
Alignment:
| Q |
9 |
attatacttggacctgattgtgcatatatattttattgacagggctcttattgctattcgcttagtagtgatgtgcttctttttacattggagagtgacc |
108 |
Q |
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| T |
14598900 |
attatacttggacctgattgtgcatatatattttattgacagggctcttattgctattcgcttggtagtgatgtgcttctttttacattggagagtgacc |
14598801 |
T |
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| Q |
109 |
aatccaaatgaagatgcaatatggttatggctcatgtcaattacctgtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcac |
208 |
Q |
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| T |
14598800 |
aatccaaatgaagatgcaatatggttatggctcatgtcaattacttgtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcac |
14598701 |
T |
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| Q |
209 |
cggttaaccgtagcactgaccttgccgtcctttatgagaaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacct |
308 |
Q |
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| T |
14598700 |
cggttaaccgtagcactgaccttgccgtcctttatgagaaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacct |
14598601 |
T |
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| Q |
309 |
ctttgtgtcaactg |
322 |
Q |
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| T |
14598600 |
ctttgtgtcaactg |
14598587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 55 - 317
Target Start/End: Original strand, 14609622 - 14609884
Alignment:
| Q |
55 |
cttattgctattcgcttagtagtgatgtgcttctttttacattggagagtgaccaatccaaatgaagatgcaatatggttatggctcatgtcaattacct |
154 |
Q |
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| T |
14609622 |
cttattggtgttcgcttagtagtaatgtgcttctttttacattggagagtgacacatccaaataaagaggcagtatggttgtgggttatgtcaattactt |
14609721 |
T |
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| Q |
155 |
gtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcaccggttaaccgtagcactgaccttgccgtcctttatgagaaatttga |
254 |
Q |
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| T |
14609722 |
gtgagatatggttcggcttttcatggatacttgaccaaattccaaagctttctccagttaatcgtagcactgacctagacgtccttcatgagaaattcca |
14609821 |
T |
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| Q |
255 |
tgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtc |
317 |
Q |
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| | | |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14609822 |
cgttgtaaccccgacaaatcccacagcaagatctgatctgcctggttgtgacctctttgtgtc |
14609884 |
T |
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