View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19779_low_7 (Length: 250)

Name: NF19779_low_7
Description: NF19779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19779_low_7
NF19779_low_7
[»] chr6 (6 HSPs)
chr6 (12-227)||(1515085-1515304)
chr6 (12-149)||(1515868-1516006)
chr6 (12-149)||(1517959-1518097)
chr6 (48-149)||(1520046-1520145)
chr6 (43-245)||(7295259-7295461)
chr6 (62-150)||(2512250-2512338)
[»] chr5 (6 HSPs)
chr5 (42-245)||(33625294-33625498)
chr5 (42-245)||(33623007-33623211)
chr5 (50-148)||(36070443-36070541)
chr5 (44-150)||(40880521-40880627)
chr5 (42-135)||(18024790-18024879)
chr5 (84-147)||(13860405-13860468)
[»] chr1 (9 HSPs)
chr1 (20-148)||(10163146-10163277)
chr1 (42-150)||(3448615-3448723)
chr1 (48-148)||(11670497-11670597)
chr1 (99-242)||(35238543-35238687)
chr1 (50-130)||(3447054-3447134)
chr1 (20-148)||(11672176-11672307)
chr1 (46-150)||(10833779-10833881)
chr1 (47-148)||(36814414-36814514)
chr1 (42-149)||(11673629-11673735)
[»] chr2 (8 HSPs)
chr2 (46-150)||(14392007-14392110)
chr2 (20-150)||(35549464-35549597)
chr2 (20-150)||(38411784-38411917)
chr2 (20-148)||(17323132-17323261)
chr2 (45-148)||(29171124-29171225)
chr2 (42-149)||(41973995-41974100)
chr2 (94-148)||(5816787-5816841)
chr2 (52-131)||(14391876-14391961)
[»] chr8 (3 HSPs)
chr8 (44-245)||(38063749-38063952)
chr8 (47-135)||(13014340-13014428)
chr8 (94-144)||(21240551-21240601)
[»] chr7 (3 HSPs)
chr7 (44-150)||(22130089-22130195)
chr7 (44-150)||(40500911-40501017)
chr7 (42-130)||(41400785-41400873)
[»] chr4 (2 HSPs)
chr4 (42-233)||(3070877-3071069)
chr4 (43-150)||(4044515-4044620)
[»] chr3 (2 HSPs)
chr3 (42-150)||(52658479-52658587)
chr3 (43-148)||(3956554-3956659)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 1515304 - 1515085
Alignment:
Q  12 atgaaatagattatagcgaaagagga---attttcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaac 108  Q
    ||||||| ||||||||| ||||||||   ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1515304 atgaaatggattatagcaaaagaggatatattctcacaatgtaacaaaccaatgtttgatttttaactgacaaaatactcatatttatttagtgtctaac 1515205  T
Q  109 atacatcatataaaattactttcgatttaggaaacttatgaa-nnnnnnnngttaattttatctattctctctaaacgcactaaaatgccaatatttaaa 207  Q
    |||||||||||||||||| |||| ||||||  ||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1515204 atacatcatataaaattagtttcaatttagagaacttatgaatttttttttattaattttatctattctctctaaacgcactaaaatgccaatatttaaa 1515105  T
Q  208 tttcgttttaaagctaaaaa 227  Q
    ||||||||||||||||||||    
T  1515104 tttcgttttaaagctaaaaa 1515085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 1516006 - 1515868
Alignment:
Q  12 atgaaatagattatagcgaaagagga---attttcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaac 108  Q
    ||||||| ||||| ||||||||||||   ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||  ||  ||||||||||||    
T  1516006 atgaaatggattagagcgaaagaggatatattctcacaatgtgacaaaccaatgtttgatttttaagtgacaaaatactcat--ttgcttagtgtctaac 1515909  T
Q  109 atacatcatataaaattactttcgatttaggaaacttatga 149  Q
    |||||||||||| |||||||||| ||| |||||||||||||    
T  1515908 atacatcatatagaattactttcaattgaggaaacttatga 1515868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 1518097 - 1517959
Alignment:
Q  12 atgaaatagattatagcgaaagagga---attttcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaac 108  Q
    ||||||| ||||| ||||||||||||   ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||  ||  ||||||||||||    
T  1518097 atgaaatggattagagcgaaagaggatatattctcacaatgtgacaaaccaatgtttgatttttaagtgacaaaatactcat--ttgcttagtgtctaac 1518000  T
Q  109 atacatcatataaaattactttcgatttaggaaacttatga 149  Q
    |||||||||||| |||||||||| ||| |||||||||||||    
T  1517999 atacatcatatagaattactttcaattgaggaaacttatga 1517959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 1520145 - 1520046
Alignment:
Q  48 tgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaacttat 147  Q
    |||||||||||||  |||||||| || |||| |||||||||||  || ||||||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  1520145 tgtgacaaaccaaaatttgatttctagctgacaaaatactcat--ttgtttagtgtctaacatacatcatatagaattactttcaattgaggaaacttat 1520048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 245
Target Start/End: Complemental strand, 7295461 - 7295259
Alignment:
Q  43 cacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaa 142  Q
    |||||||||||||||||| ||||||||| ||  ||| |||||||||  ||||||||||||| | ||| ||||| |||| ||||||||| |||| | | ||    
T  7295461 cacaatgtgacaaaccaaagtttgatttctagttgacaaaatactc--atttatttagtgtttgacacacatcgtatataattacttttgattaaaggaa 7295364  T
Q  143 cttatgaannnnnnnngttaattttatc-tattctctctaaacgca-ctaaaatgccaatatttaaatttcgttttaaagctaaaaatacattaggccga 240  Q
    ||||||||         |||||||| || |||||| ||||||||||  |||||||||  | ||||||||||| |||||  || ||||||||||||||||     
T  7295363 cttatgaaattattttcttaattttgtcttattctatctaaacgcatataaaatgcctctgtttaaatttcgctttaagccttaaaatacattaggccgg 7295264  T
Q  241 ccctg 245  Q
    |||||    
T  7295263 ccctg 7295259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 2512338 - 2512250
Alignment:
Q  62 gtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaacttatgaa 150  Q
    ||||||||| ||  |||||||||||||||||||| ||||||||  | | ||||||||||||||||||||||||| ||| ||||||||||    
T  2512338 gtttgatttctagttgataaaatactcatatttaattagtgtcggagacacatcatataaaattactttcgattgagggaacttatgaa 2512250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 245
Target Start/End: Complemental strand, 33625498 - 33625294
Alignment:
Q  42 tcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaa 141  Q
    |||||||||||  ||||||  |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||    
T  33625498 tcacaatgtgaagaaccaaaatttgatttttaactgacaaaatactcatatttatttagtgtctaacgtacatcatatataattacttttgattgaggaa 33625399  T
Q  142 acttatgaannnnnnnngttaattttatc-tattctctctaaacgcac-taaaatgccaatatttaaatttcgttttaaagctaaaaatacattaggccg 239  Q
    |||||||||        ||||||||| || |||||||||||||||||| |||||   |  ||||||||||||| |||| | |  |||||||||| |||||    
T  33625398 acttatgaattttttttgttaattttgtcttattctctctaaacgcacttaaaaaatctttatttaaatttcgctttaga-cataaaatacattgggccg 33625300  T
Q  240 accctg 245  Q
    ||||||    
T  33625299 accctg 33625294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 245
Target Start/End: Complemental strand, 33623211 - 33623007
Alignment:
Q  42 tcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaa 141  Q
    |||||||||||  | ||||  |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |||| |||||    
T  33623211 tcacaatgtgaagagccaaaatttgatttttaactgacaaaatactcatatttatttagtgtcaaacgtacatcatatataattacttttgattgaggaa 33623112  T
Q  142 acttatgaannnnnnnngttaattttatc-tattctctctaaacgcac-taaaatgccaatatttaaatttcgttttaaagctaaaaatacattaggccg 239  Q
    | |||||||        ||||||||| || |||||||||||||||||| |||||   |  ||||||||||||| |||| | |  |||||||||| |||||    
T  33623111 atttatgaattttttttgttaattttgtcttattctctctaaacgcacttaaaaaatctttatttaaatttcgctttaga-cataaaatacattgggccg 33623013  T
Q  240 accctg 245  Q
    ||||||    
T  33623012 accctg 33623007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 36070541 - 36070443
Alignment:
Q  50 tgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaacttatg 148  Q
    |||| |||||| ||||||||||||  ||| ||||||||||| |||| ||||||||| ||| |||||||||| |||| ||||||| | ||||||||||||    
T  36070541 tgactaaccaaagtttgatttttagttgacaaaatactcatgtttaattagtgtctgacacacatcatatagaattgctttcgactcaggaaacttatg 36070443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 40880521 - 40880627
Alignment:
Q  44 acaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaac 143  Q
    ||||| ||||||||||| ||||||||| || || | |||||| ||||||||| ||||||||| | | |||||||||| |||||||||||||| | ||||     
T  40880521 acaatatgacaaaccaaagtttgatttatagctcacaaaatattcatatttaattagtgtctgaaacacatcatatagaattactttcgattgaagaaat 40880620  T
Q  144 ttatgaa 150  Q
    |||||||    
T  40880621 ttatgaa 40880627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 18024790 - 18024879
Alignment:
Q  42 tcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatt 135  Q
    ||||||| ||||||| ||| ||| ||||| |||||||  |||||||| ||||    |||||||||||| |||||||||| ||||||||||||||    
T  18024790 tcacaatatgacaaatcaaagttcgatttctaactgactaaatactcgtatt----tagtgtctaacacacatcatatagaattactttcgatt 18024879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 13860405 - 13860468
Alignment:
Q  84 tactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaacttat 147  Q
    |||||||||||| ||||| ||  ||| ||||||||||||||||||||||||| ||| |||||||    
T  13860405 tactcatatttaattagtatcagacacacatcatataaaattactttcgattgagggaacttat 13860468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 10163146 - 10163277
Alignment:
Q  20 gattatagcgaaagagga---attttcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatca 116  Q
    ||||||||||||||||||   | | ||||||||||||||||||| ||||||||| || |||| |||||||||||||||| ||||||||| | | ||||||    
T  10163146 gattatagcgaaagaggatatactctcacaatgtgacaaaccaaagtttgatttctagctgacaaaatactcatatttaattagtgtctgatacacatca 10163245  T
Q  117 tataaaattactttcgatttaggaaacttatg 148  Q
    |||| |||||||||||||| ||| ||||||||    
T  10163246 tatagaattactttcgattgagggaacttatg 10163277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 3448723 - 3448615
Alignment:
Q  42 tcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaa 141  Q
    ||||||||||||||||||| |||||||||||| || | |||||||||||||||| ||||||| | |||  ||||||||| |||||||||  ||| |||||    
T  3448723 tcacaatgtgacaaaccaaagtttgatttttatctaacaaaatactcatatttaattagtgtttgacacgcatcatatagaattacttttcattgaggaa 3448624  T
Q  142 acttatgaa 150  Q
    |||||||||    
T  3448623 acttatgaa 3448615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 11670597 - 11670497
Alignment:
Q  48 tgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaacttat 147  Q
    |||||||||| |||||||||||| || |||| |||||| ||||||||| ||||||||  ||| |||||||||||||||| |||||||| ||| |||||||    
T  11670597 tgtgacaaacaaatgtttgatttatagctgacaaaatattcatatttaattagtgtcagacacacatcatataaaattattttcgattgagggaacttat 11670498  T
Q  148 g 148  Q
    |    
T  11670497 g 11670497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 35238687 - 35238543
Alignment:
Q  99 agtgtctaacatacatcatataaaattactttcgatttaggaaacttatgaannnnnnnngttaattttatct-attctctctaaacgcact-aaaatgc 196  Q
    |||||||||||||||||||||| ||||||||| |||| ||| ||||||||||        ||||||||||||| |||||||||||||||||| ||||| |    
T  35238687 agtgtctaacatacatcatatataattacttttgattgagggaacttatgaattttttt-gttaattttatcttattctctctaaacgcacttaaaatac 35238589  T
Q  197 caatatttaaatttcgttttaaagctaaaaatacattaggccgacc 242  Q
      |||||||||||||| |||||   |||||||||||| ||||||||    
T  35238588 atatatttaaatttcgctttaagcttaaaaatacattgggccgacc 35238543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 3447134 - 3447054
Alignment:
Q  50 tgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattacttt 130  Q
    ||||||| |||  ||||||||||| |  | |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  3447134 tgacaaatcaaaatttgatttttagcgaacaaaatactcatatttatttagtgtctgacacacatcatataaaattacttt 3447054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 11672307 - 11672176
Alignment:
Q  20 gattatagcgaaagagga---attttcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatca 116  Q
    ||||||||||||||||||   | | | |||||||||| |||||| |||||| || || ||   |||||||||||||||| |||||||| | || ||||||    
T  11672307 gattatagcgaaagaggatatactcttacaatgtgactaaccaaagtttgacttctagctatcaaaatactcatatttaattagtgtcaatcacacatca 11672208  T
Q  117 tataaaattactttcgatttaggaaacttatg 148  Q
    |||||||||| |||||||| | | ||||||||    
T  11672207 tataaaattattttcgattgaaggaacttatg 11672176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 10833779 - 10833881
Alignment:
Q  46 aatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaactt 145  Q
    |||||||||| | || ||||||||| || |||| |||||||| ||  ||||||||| ||| ||| |||||||||| |||||||||||||| | | |||||    
T  10833779 aatgtgacaagctaaagtttgatttctacctgacaaaatactaat--ttatttagtatctgacacacatcatatagaattactttcgattgaaggaactt 10833876  T
Q  146 atgaa 150  Q
    |||||    
T  10833877 atgaa 10833881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 36814414 - 36814514
Alignment:
Q  47 atgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaactta 146  Q
    |||||||||||||| ||||||||| || |||| ||||||||||||||||  || ||||| ||  || || |||||||||| |||||||| ||| ||||||    
T  36814414 atgtgacaaaccaaagtttgatttatagctgacaaaatactcatatttaaatattgtctgac-cacgtcgtataaaattattttcgattgagggaactta 36814512  T
Q  147 tg 148  Q
    ||    
T  36814513 tg 36814514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 11673735 - 11673629
Alignment:
Q  42 tcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaa 141  Q
    |||| ||||||||||  || ||||||||||||  | | |||||||| ||||||| ||||||||  ||| ||||||||| |||||| |||||||| ||| |    
T  11673735 tcaccatgtgacaaattaaagtttgatttttaggtaacaaaatacttatatttaattagtgtcagacacacatcatat-aaattattttcgattgaggga 11673637  T
Q  142 acttatga 149  Q
    ||||||||    
T  11673636 acttatga 11673629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 14392007 - 14392110
Alignment:
Q  46 aatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaactt 145  Q
    ||||||||||||||| || |||||| || |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||| |||||    
T  14392007 aatgtgacaaaccaaagtatgatttctagctgacaaaatactcatatttatttagtgtctaacat-catcatatagaattactttcaattgagggaactt 14392105  T
Q  146 atgaa 150  Q
    |||||    
T  14392106 atgaa 14392110  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 35549597 - 35549464
Alignment:
Q  20 gattatagcgaaagagga---attttcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatca 116  Q
    ||||||||||||||||||   | | |||||||||||||| |||| ||||||||  | ||||| |||||||||||||||| | ||||||| ||| | ||||    
T  35549597 gattatagcgaaagaggatatactctcacaatgtgacaatccaaagtttgattcctgactgacaaaatactcatatttaatcagtgtctgacacaaatca 35549498  T
Q  117 tataaaattactttcgatttaggaaacttatgaa 150  Q
    |||| |||||||||||||| ||| ||||||||||    
T  35549497 tatagaattactttcgattgagggaacttatgaa 35549464  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 38411917 - 38411784
Alignment:
Q  20 gattatagcgaaagagga---attttcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatca 116  Q
    ||||||||||||||||||   | ||||||||||||||||||||| ||||||||| || |||||||||| |||||||||| | | |||    || | ||||    
T  38411917 gattatagcgaaagaggatatactttcacaatgtgacaaaccaaagtttgatttctagctgataaaatgctcatatttaatcactgttatgcacaaatca 38411818  T
Q  117 tataaaattactttcgatttaggaaacttatgaa 150  Q
    ||||||||||||||||||| | | ||||||||||    
T  38411817 tataaaattactttcgattgaaggaacttatgaa 38411784  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 17323261 - 17323132
Alignment:
Q  20 gattatagcgaaagagga---attttcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatca 116  Q
    ||||||||| ||||||||   ||| ||||||||||||||||||| ||||||||| || | || |||||| ||||  ||||||||||||| ||| ||||||    
T  17323261 gattatagcaaaagaggatatattctcacaatgtgacaaaccaaagtttgatttctagcggacaaaatattcat--ttatttagtgtctgacacacatca 17323164  T
Q  117 tataaaattactttcgatttaggaaacttatg 148  Q
    |||| |||||||||||||| | | ||||||||    
T  17323163 tatagaattactttcgattgaaggaacttatg 17323132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 29171225 - 29171124
Alignment:
Q  45 caatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaact 144  Q
    |||||| ||||||||| ||||||||| || | || |||||||||||  ||||||||||||| ||| |||||||||| |||||||||||||| | | ||||    
T  29171225 caatgtcacaaaccaaagtttgatttctagcagacaaaatactcat--ttatttagtgtctgacacacatcatatagaattactttcgattgaaggaact 29171128  T
Q  145 tatg 148  Q
    ||||    
T  29171127 tatg 29171124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 41973995 - 41974100
Alignment:
Q  42 tcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaa 141  Q
    ||||||||||||||||||| |||| ||||||| || | |||||||||  |||||||| |||||  ||| |||||||||| |||||||||| ||| | | |    
T  41973995 tcacaatgtgacaaaccaaagttttatttttagctaacaaaatactc--atttatttggtgtccgacacacatcatatagaattactttccattgaagga 41974092  T
Q  142 acttatga 149  Q
    ||||||||    
T  41974093 acttatga 41974100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 5816787 - 5816841
Alignment:
Q  94 tatttagtgtctaacatacatcatataaaattactttcgatttaggaaacttatg 148  Q
    |||||||||||||||| |||||||||||||||||||| |||| ||| ||||||||    
T  5816787 tatttagtgtctaacacacatcatataaaattacttttgattgagggaacttatg 5816841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 14391876 - 14391961
Alignment:
Q  52 acaaaccaatgtttgatttttaactgataaaatactcatatttatttagt------gtctaacatacatcatataaaattactttc 131  Q
    ||||| ||| ||||||||| ||||||| ||||||||||||||||||||||      || |||||||||||||||| ||||||||||    
T  14391876 acaaagcaaagtttgatttctaactgacaaaatactcatatttatttagtgtgtaagtgtaacatacatcatatagaattactttc 14391961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 245
Target Start/End: Complemental strand, 38063952 - 38063749
Alignment:
Q  44 acaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaac 143  Q
    |||||||||||||||||  ||||||||  | ||||||||||||||||||||| ||| ||||||||| ||||| | || |||||||||||||| |||||||    
T  38063952 acaatgtgacaaaccaacatttgattt--agctgataaaatactcatatttaattaatgtctaacacacatcttgtagaattactttcgattgaggaaac 38063855  T
Q  144 ttatgaa--nnnnnnnngttaattttatc-tattctctctaaacgca-ctaaaatgccaatatttaaatttcgttttaaagctaaaaatacattaggccg 239  Q
    |||||||           ||||||||||| || ||| ||||||||||  |||||||||  ||||||||||||| |||| | ||||| |||||||||||||    
T  38063854 ttatgaattttttttctcttaattttatcttactctatctaaacgcatgtaaaatgcctctatttaaatttcgctttagacctaaatatacattaggccg 38063755  T
Q  240 accctg 245  Q
     |||||    
T  38063754 gccctg 38063749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 13014428 - 13014340
Alignment:
Q  47 atgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatt 135  Q
    ||||||||||||||  ||| |||||||  ||| |||||||||||||||| ||||| ||| | | | |||||||| ||||||||||||||    
T  13014428 atgtgacaaaccaaaatttaatttttaggtgacaaaatactcatatttaattagtatctcatacatatcatatagaattactttcgatt 13014340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 21240551 - 21240601
Alignment:
Q  94 tatttagtgtctaacatacatcatataaaattactttcgatttaggaaact 144  Q
    |||||||||||| ||| |||||||||| |||||||||||||| ||||||||    
T  21240551 tatttagtgtctcacacacatcatatagaattactttcgattgaggaaact 21240601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 22130195 - 22130089
Alignment:
Q  44 acaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaac 143  Q
    |||||||||||||| || ||||||||| ||  ||| ||||||||||| |||| ||||||| | |||||||||||||||||||| |||||||| |||||||    
T  22130195 acaatgtgacaaactaaagtttgatttctagttgacaaaatactcatgtttaattagtgtatgacatacatcatataaaattattttcgattaaggaaac 22130096  T
Q  144 ttatgaa 150  Q
    |||||||    
T  22130095 ttatgaa 22130089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 40500911 - 40501017
Alignment:
Q  44 acaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaac 143  Q
    |||||||||||||| || ||||||||| ||  ||| ||||||||||| |||| ||||||| | |||||||||||||||||||| |||||||| |||||||    
T  40500911 acaatgtgacaaactaaagtttgatttctagttgacaaaatactcatgtttaattagtgtatgacatacatcatataaaattattttcgattaaggaaac 40501010  T
Q  144 ttatgaa 150  Q
    |||||||    
T  40501011 ttatgaa 40501017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 41400785 - 41400873
Alignment:
Q  42 tcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattacttt 130  Q
    |||||||||||||||| ||  |||||||| ||||| | ||||||||| |||||| ||||||| | ||| |||| ||||| |||||||||    
T  41400785 tcacaatgtgacaaactaaaatttgatttctaactaacaaaatactcgtatttaattagtgtatgacacacattatatataattacttt 41400873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 233
Target Start/End: Complemental strand, 3071069 - 3070877
Alignment:
Q  42 tcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaa 141  Q
    ||||||||||||||||||| ||||||||| || |||| |||||||||||||||| ||||||||| |   | |||||| | |||||||||  ||| ||| |    
T  3071069 tcacaatgtgacaaaccaaagtttgatttctagctgacaaaatactcatatttaattagtgtctgaagcatatcatagataattacttttcattgaggga 3070970  T
Q  142 acttatgaannnnnnnngttaatttta-tctattctctctaaacgcac-taaaatgccaatatttaaatttcgttttaaagctaaaaatacatt 233  Q
    |||||||||         ||||||||| | |||||||||||||||||| |||||| || ||||||||||||  |||||   |||||||||||||    
T  3070969 acttatgaatttttttc-ttaattttattttattctctctaaacgcacttaaaatacctatatttaaattttcttttaggcctaaaaatacatt 3070877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 4044620 - 4044515
Alignment:
Q  43 cacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaa 142  Q
    ||||||||||||||| || |||| |||| || | |  |||||||||||  ||| |||| |||| ||||| |||||||| ||||||||||||||  | |||    
T  4044620 cacaatgtgacaaactaaagttttatttctagccggcaaaatactcat--ttaattagcgtctgacatatatcatatataattactttcgattatgaaaa 4044523  T
Q  143 cttatgaa 150  Q
    ||||||||    
T  4044522 cttatgaa 4044515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 52658479 - 52658587
Alignment:
Q  42 tcacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaa 141  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| |  ||||| | | ||||||||| | |||||||||||||| ||| | || ||| |    
T  52658479 tcacaatgtgacaaaccaaagtttgatttttaactgacaaaatacccgcatttaatgaatgtctaacacatatcatataaaattatttttgtttgaggga 52658578  T
Q  142 acttatgaa 150  Q
    |||||||||    
T  52658579 acttatgaa 52658587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 3956659 - 3956554
Alignment:
Q  43 cacaatgtgacaaaccaatgtttgatttttaactgataaaatactcatatttatttagtgtctaacatacatcatataaaattactttcgatttaggaaa 142  Q
    |||||| |||||||| || |||| |||| ||  ||| |||||||||||||||| ||||||| | ||| | |||||||| |||||||||||||| ||| ||    
T  3956659 cacaatatgacaaactaaagtttaatttctagttgacaaaatactcatatttaattagtgtttgacaaagatcatatagaattactttcgattgagggaa 3956560  T
Q  143 cttatg 148  Q
    ||||||    
T  3956559 cttatg 3956554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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