View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19779_low_8 (Length: 249)
Name: NF19779_low_8
Description: NF19779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19779_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 39290148 - 39290389
Alignment:
| Q |
1 |
ggcattcaatcttctttattgccaatgaatttgataaaaaagaaactttggcaattagagggttgggttgaacnnnnnnnnattttatcttattaccttt |
100 |
Q |
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| T |
39290148 |
ggcattcaatattctttattgccaatgaatttgataaaaaagaaactttggcaattagagggttgggttgaacttttttttattttatcttattaccttt |
39290247 |
T |
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| Q |
101 |
ctttgctgctcagcatctatgcatttcatggagataggtacttttataatgtgcattgctagttgaaatgacttgtttcagtaaccaataatctggattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39290248 |
ctttgctgctcagcatctatgcatttcatggagataggtacttttataatgtgcattgctagttgaaatgacttgtttcagtaaccaataatctggattt |
39290347 |
T |
|
| Q |
201 |
aaatctgtaattttcacattagagtggtttatattgcctttg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39290348 |
aaatctgtaattttcacattagagtggtttatattgcctttg |
39290389 |
T |
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