View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1977_high_11 (Length: 236)
Name: NF1977_high_11
Description: NF1977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1977_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 41755058 - 41754846
Alignment:
| Q |
5 |
catcagaataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagg |
104 |
Q |
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| T |
41755058 |
catcataataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagg |
41754959 |
T |
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| Q |
105 |
gactaagaaatcatatggtgtatacgacaacaacagcagctctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctca |
204 |
Q |
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| T |
41754958 |
gactaagaaatcatatggtgtatacgac---aacagcaactctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctca |
41754862 |
T |
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| Q |
205 |
ccatcgtacaagcaac |
220 |
Q |
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| T |
41754861 |
ccatcgtacaagcaac |
41754846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 41760936 - 41760756
Alignment:
| Q |
34 |
gtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagggactaagaaatcatatggtgtatacgaca |
133 |
Q |
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| T |
41760936 |
gtttattcatttttattggttttctattgtgtgacataaattaatgcaaattttacagaagtggtcgaagggactaagaaatcatatggtgtgtatgaca |
41760837 |
T |
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| Q |
134 |
acaacagcagctctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctcaccatcgtacaagcaac |
220 |
Q |
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| T |
41760836 |
aaaac------tctgtaaaattgtttgtatttggagactcatatgctgatacaggcaattttatgggctcaccatcgtacaagcaac |
41760756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 42225971 - 42225933
Alignment:
| Q |
150 |
aaaattgtttgtatttggagattcatatgctgacacagg |
188 |
Q |
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|||||||||||| ||||||||||||||||| |||||||| |
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| T |
42225971 |
aaaattgtttgtctttggagattcatatgcagacacagg |
42225933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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