View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1977_high_3 (Length: 362)
Name: NF1977_high_3
Description: NF1977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1977_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 3350486 - 3350227
Alignment:
| Q |
7 |
aaaatgaacttcactaatctatcattatgtcttgtctattttctcggacaataaattgagcaaaacaaataaagcaaaaaggactaattatgtgttggac |
106 |
Q |
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| T |
3350486 |
aaaatgaacttcactaatctatcattatgtcttgtctattttctcggacaataaattgagcaaaacaaataaagcaaaaaggactaattatgtgttggac |
3350387 |
T |
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| Q |
107 |
tcatcaaattcagattatatttgcgggaccacagtataaaccaatcatacatattatgtgtgaacactttctgctgtataatattgattgaccaatgcca |
206 |
Q |
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| T |
3350386 |
tcatcaaattcaaattatatttgcggggccacagtataaaccaatcatacatattatgtgtgaacactttctgctgtataatattgattgaccaatgcca |
3350287 |
T |
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| Q |
207 |
acgtacaacacacagacgaaaaaactcatgcaaacaaacattataaatacatgtcataat |
266 |
Q |
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| T |
3350286 |
acgtacaacacacagacgaaaaaactcatgcaaacaaacattataaatacatgtcataat |
3350227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 3350226 - 3350163
Alignment:
| Q |
292 |
aattaaagattagcaagcaaaactttatttttgtatatccatccttgcttaaatatttcctatg |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3350226 |
aattaaagattagcaagcaaaactttatttttgtatatccaaccttgcttaaatatttcctatg |
3350163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 3375635 - 3375569
Alignment:
| Q |
285 |
ctcatcaaattaaagattagcaagcaaaactttatttttgtatatccatccttgcttaaatatttcctatg |
355 |
Q |
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|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3375635 |
ctcatcaagctatagattagcaagcaaaactttatttttgtat----atccttgcttaaatatttcctatg |
3375569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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