View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1977_high_5 (Length: 297)
Name: NF1977_high_5
Description: NF1977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1977_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 35013501 - 35013225
Alignment:
| Q |
1 |
agaattaatagaaagtgacattactggatgcaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctac |
100 |
Q |
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| T |
35013501 |
agaattaatagaaagtgacattactggatgcaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctac |
35013402 |
T |
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| Q |
101 |
tttatcttttgacagaattaatcaaagctacttattcctcttcaataacagcattcatgaaaagggaagattgatcataaaaaatgtgtgatatcaaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35013401 |
tttatcttttgacagaattaatcaaagctacttattcctcttcaataacagcattcatgaaaagggaagattgatcataaaaaatgtgtgatttcaaccc |
35013302 |
T |
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| Q |
201 |
cttagctcaataatgagactttttcttacaatctttcatggcatatgcttttggtgaaagaattaaagtaggtatat |
277 |
Q |
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| T |
35013301 |
cttagctcaataatgagactttttcttacaatctttcatggcatatgcttttggtgaaagaattaaagtaggtatat |
35013225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 4459634 - 4459487
Alignment:
| Q |
1 |
agaattaatagaaagtgacattactggatgcaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctac |
100 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4459634 |
agaattaatagaaagtgaaattactggatgtaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctac |
4459535 |
T |
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| Q |
101 |
tttatcttttgacagaattaatcaaagctacttattcctcttcaataacag |
151 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
4459534 |
tttatcttttgacagaattaat---agctactcattcctcttcaataacag |
4459487 |
T |
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