View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1977_high_7 (Length: 277)
Name: NF1977_high_7
Description: NF1977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1977_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 48286625 - 48286883
Alignment:
| Q |
1 |
atgcaaaaatggtgtggcgttttgaacaaagtagtgttcagatatgggcagataatggtgatttgaatttaggatcgacgaaggtggctgcgtttgatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48286625 |
atgcaaaaatggtgtggcgttttgaacaaagtagtgttcagatatgggcagataatggtgatttgaatttaggatcgacgaaggtggctgcgtttgatgt |
48286724 |
T |
|
| Q |
101 |
gaaggtgaagaataagacggcggtgaaggcggaaacgaaggttagacatgaggagttgaatgagaaacaaaggaggaagttgaaaagtgcttttagtagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48286725 |
gaaggtgaagaataagacggcggtgaagggggaaacgaaggttagacatgaggagttgaatgagaaacaaaggaggaagttgaaaagtgcttttagtagt |
48286824 |
T |
|
| Q |
201 |
aaagctttggtgcctagtgttgaggtgaaaacaagaacgagtgttagggttcaaggttg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48286825 |
aaagctttggtgcctagtgttgaggtgaaaacaagaacgagtgttagggttcaaggttg |
48286883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University