View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1977_low_2 (Length: 392)
Name: NF1977_low_2
Description: NF1977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1977_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 168 - 376
Target Start/End: Original strand, 2171012 - 2171221
Alignment:
| Q |
168 |
tgttattatttggttacaatatcaaagtattttccctnnnnnnnnn-gaatcaaaatatttcttatgatgatcaaacaaacatataatttttgttgacnn |
266 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2171012 |
tgttattatttggttacaatatcaaagtattttccctaaaaaaaaaagaatcaaaatatttcttatgatgatcaaacaaacatataatttttgttgacaa |
2171111 |
T |
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| Q |
267 |
nnnnncaaacattatttctttcattctaaaaggacccaaacacaagagaaccatagatgcattgcttatcgattatcctcctaaaaaaccaaatcaaaca |
366 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2171112 |
aaaaacaaacattatttctttcattccaaaaggacccaaacacaagagaaccatagatgcattgcttatcgattatcctcctaaaaaaccaaatcaaaca |
2171211 |
T |
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| Q |
367 |
tttaattgtt |
376 |
Q |
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|||||||||| |
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| T |
2171212 |
tttaattgtt |
2171221 |
T |
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Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 2170798 - 2170894
Alignment:
| Q |
12 |
tatactactcttcatgcaaatataataaggatattgtgatatgtgaatcttcatatattatatgttgcgtactctctatattttgattaaaataaac |
108 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2170798 |
tataccactcttcatgcaaatataataaggagattgtgatatgtgaatcttcatatattatatgttgcgtactctctagattttgattaaaataaac |
2170894 |
T |
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