View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1977_low_4 (Length: 333)
Name: NF1977_low_4
Description: NF1977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1977_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 24812418 - 24812725
Alignment:
| Q |
19 |
ataggctacatgaaaaaatcttaccatacctataccaaatggaaggctttatctgttagaaaacagtgttctgattgtggatagcaaaaactagaagttt |
118 |
Q |
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| T |
24812418 |
ataggctacatgaaaaaatcttaccatacctataccaaatggaaggctttatctgttagaaaacagtgttctgattgtggatagcaaaaactagaagttt |
24812517 |
T |
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| Q |
119 |
gtttaaatttctcgacacaacagcgctatagcgccactataatctctatttggcaatattttcaaagttatggtatactagtaaatacctttgcaccatt |
218 |
Q |
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| T |
24812518 |
gtttaaatttctcgacacaacagcgctatagcgccgctataatctctatttggcaatattttcaaagttatggtatactagtaaatacctttgcaccatt |
24812617 |
T |
|
| Q |
219 |
tcttcaacaaattgaggaggatgagaacttgcaacagcattgtaccaattgatactgtcacctatcaaaggccaacctctccttcctggtggcaatcttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24812618 |
tcttcaacaaattgaggaggatgagaacttgcaacagcattgtaccaattgatactgtcacctatcaaaggccaacctctccttcctggtggcaatcttc |
24812717 |
T |
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| Q |
319 |
ctttgctt |
326 |
Q |
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|| ||||| |
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| T |
24812718 |
ctatgctt |
24812725 |
T |
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