View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1977_low_6 (Length: 294)

Name: NF1977_low_6
Description: NF1977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1977_low_6
NF1977_low_6
[»] chr4 (27 HSPs)
chr4 (1-258)||(1489301-1489558)
chr4 (3-261)||(12121399-12121657)
chr4 (6-261)||(1513352-1513604)
chr4 (61-258)||(1537767-1537964)
chr4 (79-284)||(1508021-1508226)
chr4 (61-254)||(546819-547012)
chr4 (62-256)||(8184031-8184225)
chr4 (65-258)||(1552771-1552967)
chr4 (61-256)||(1524486-1524678)
chr4 (64-257)||(7225886-7226079)
chr4 (63-256)||(7307764-7307957)
chr4 (61-241)||(53761772-53761949)
chr4 (194-257)||(55505238-55505301)
chr4 (62-112)||(1519143-1519193)
chr4 (61-113)||(532236-532288)
chr4 (91-254)||(640821-640984)
chr4 (70-136)||(659733-659799)
chr4 (51-112)||(1600467-1600528)
chr4 (196-256)||(558402-558462)
chr4 (194-257)||(644734-644797)
chr4 (60-239)||(8187090-8187269)
chr4 (65-111)||(570400-570446)
chr4 (65-167)||(1548428-1548530)
chr4 (61-131)||(55505108-55505178)
chr4 (194-255)||(553384-553445)
chr4 (194-256)||(1545677-1545739)
chr4 (208-257)||(570254-570303)
[»] chr3 (7 HSPs)
chr3 (61-254)||(51113781-51113974)
chr3 (61-246)||(13470732-13470917)
chr3 (61-256)||(51120893-51121088)
chr3 (194-254)||(514861-514921)
chr3 (61-237)||(51764440-51764616)
chr3 (65-112)||(1657299-1657346)
chr3 (205-257)||(1657154-1657206)
[»] chr8 (10 HSPs)
chr8 (61-252)||(18315273-18315464)
chr8 (63-248)||(27922420-27922605)
chr8 (62-256)||(34936164-34936358)
chr8 (55-111)||(21235607-21235663)
chr8 (62-237)||(17636402-17636576)
chr8 (65-112)||(28246299-28246346)
chr8 (206-257)||(28246438-28246489)
chr8 (51-170)||(32151291-32151410)
chr8 (184-251)||(44736444-44736511)
chr8 (208-257)||(21235461-21235510)
[»] chr2 (2 HSPs)
chr2 (61-256)||(45245085-45245280)
chr2 (62-112)||(32785773-32785823)
[»] chr6 (17 HSPs)
chr6 (61-248)||(6402772-6402959)
chr6 (61-246)||(6415880-6416065)
chr6 (65-255)||(9411260-9411450)
chr6 (61-239)||(19632360-19632538)
chr6 (61-237)||(6432084-6432260)
chr6 (61-248)||(7994182-7994369)
chr6 (205-255)||(28934954-28935004)
chr6 (94-239)||(6585270-6585415)
chr6 (63-181)||(6423196-6423314)
chr6 (61-119)||(6589323-6589381)
chr6 (65-111)||(12102315-12102361)
chr6 (65-112)||(11936279-11936326)
chr6 (65-112)||(11948259-11948306)
chr6 (194-248)||(10579870-10579924)
chr6 (61-255)||(14820598-14820792)
chr6 (63-248)||(6603204-6603389)
chr6 (67-131)||(14802365-14802429)
[»] chr7 (1 HSPs)
chr7 (61-255)||(15092151-15092345)
[»] chr1 (4 HSPs)
chr1 (70-256)||(9586543-9586729)
chr1 (94-255)||(7554393-7554554)
chr1 (155-261)||(29719017-29719123)
chr1 (207-257)||(43634082-43634132)
[»] chr5 (6 HSPs)
chr5 (68-227)||(41901542-41901701)
chr5 (67-255)||(38267562-38267750)
chr5 (91-168)||(20478112-20478189)
chr5 (63-131)||(41889556-41889624)
chr5 (196-256)||(12845497-12845557)
chr5 (194-254)||(32267381-32267441)
[»] scaffold0041 (1 HSPs)
scaffold0041 (91-253)||(39091-39253)
[»] scaffold0807 (1 HSPs)
scaffold0807 (63-117)||(1466-1520)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 1489301 - 1489558
Alignment:
Q  1 aagacatgttctgagattaggcatttgaacttaagaagatctttaggaaagaagctgtgcggaatgaactttgaagttcccaaactagaagtgttgaact 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1489301 aagacatgttctgatattaggcatttgaacttaagaagatctttaggaaagaagctgtgcggaatgaactttgaagttcccaaactagaagtgttgaact 1489400  T
Q  101 tgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgttttaatttcacaga 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1489401 tgtcatatacaaatgttaacaacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgttttaatgtcacaga 1489500  T
Q  201 gaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaaa 258  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1489501 gaagggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttgaaa 1489558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 12121399 - 12121657
Alignment:
Q  3 gacatgttctgagattaggcatttgaacttaagaagatctttaggaaagaagctgtgcggaatgaactttgaagttcccaaactagaagtgttgaacttg 102  Q
    ||||||||| ||||||| ||||||||||||||  || | |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  12121399 gacatgttccgagattacgcatttgaacttaaccagttgtttaggaaggaagctgcgccgaatgaactttgaagttcccaaactagaagtgttgaacttg 12121498  T
Q  103 tcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgttttaatttcacagaga 202  Q
    ||||||||||||||| | || |||||||| |  |||||||||| |||||||||||||||||||||||||| ||||||| |||| |||  | |||||||||    
T  12121499 tcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactctcactggaatggtgcttttttgtcacagaga 12121598  T
Q  203 agggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaaatat 261  Q
     |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  12121599 tgggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaaatat 12121657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 1513352 - 1513604
Alignment:
Q  6 atgttctgagattaggcatttgaacttaagaagatctttaggaaagaagctgtgcggaatgaactttgaagttcccaaactagaagtgttgaacttgtca 105  Q
    ||||||||||||||||||||| ||| ||| ||  | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1513352 atgttctgagattaggcatttaaacataacaaactatttaggaaaggagctgtgcggaatgaactttgaagttcccaaactagaagtgttgaacttgtca 1513451  T
Q  106 tatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgttttaatttcacagagaagg 205  Q
    | |||||||||| | || |||||||| |  |||||||||| |||||| |||||||||||||||||| ||||| |||   ||| || | ||||||||| ||    
T  1513452 tttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggcttttgcaactcatactgaaag---gttgtattgtcacagagatgg 1513548  T
Q  206 gagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaaatat 261  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  1513549 gagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaatat 1513604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 61 - 258
Target Start/End: Original strand, 1537767 - 1537964
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||    
T  1537767 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtgggc 1537866  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaaa 258  Q
    |||||||||| |||||||||   |||| |  | ||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  1537867 ttttgcaacttttactggaactttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcactcaactaagagagatcaatttgaaa 1537964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 79 - 284
Target Start/End: Original strand, 1508021 - 1508226
Alignment:
Q  79 cccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactgg 178  Q
    ||||||||||||||||||||||||||| |||| |||||| | || |||||||||||||||||||||| |||||| |||||||||||||||||| | ||||    
T  1508021 cccaaactagaagtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaactcgtgctgg 1508120  T
Q  179 aagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaaatatggtcctaaggtgcgtga 278  Q
    | || |||  |    |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  1508121 atggttgtgctgcagtcaccgagatgggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttgaaatatggtcctaaggtacgtgg 1508220  T
Q  279 tgatgt 284  Q
    ||||||    
T  1508221 tgatgt 1508226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 61 - 254
Target Start/End: Complemental strand, 547012 - 546819
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    |||||||||||||||||||| ||| | || ||| |||||||||||  ||||| ||| || || |||||||| | ||| ||||||| | ||||  ||||||    
T  547012 ggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggc 546913  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaattt 254  Q
    ||||| || | ||||||||||  |||||| || ||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  546912 ttttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaattt 546819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 256
Target Start/End: Original strand, 8184031 - 8184225
Alignment:
Q  62 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggct 161  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||  ||| | ||   | |||| | || |||||||| | ||||  |||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggct 8184130  T
Q  162 tttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttga 256  Q
    |||| |||| |||||||||   |||   |   |||||||  ||||||||||||||||||||||||| ||||||||||| | || |||||||||||    
T  8184131 tttggaactgttactggaaaattgtgaaatgatcacagatgagggagtgaagcatgtgctagaaaattgcacacaactgaaagtgatcaatttga 8184225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 258
Target Start/End: Original strand, 1552771 - 1552967
Alignment:
Q  65 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggctttt 164  Q
    ||||||||||| |||||||||| ||||||||||| |||||| |||||||| |||| || ||||||||   ||| || |||| |  ||| |||||||||||    
T  1552771 tgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggctttt 1552870  T
Q  165 gcaactcttactggaagggtg---ttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaaa 258  Q
    ||| || ||||| |||   ||   || | || |||| ||||||||||||||||||||   |||||| |||   ||||||||||||||||||||||||    
T  1552871 gcagctgttactagaacaatgtaattattatgtcaccgagaagggagtgaagcatgtcggagaaaattgcttgcaactaagagagatcaatttgaaa 1552967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 256
Target Start/End: Original strand, 1524486 - 1524678
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    |||||||||||||||||||||||  | || |||||||| ||||||  ||||| |||| | || |||||||| | | | ||||||  | |||| |||||||    
T  1524486 ggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggc 1524585  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttga 256  Q
    |||||||||| ||| ||    | ||||   || ||||||||| |||||||||  ||||| ||||||| ||||||||||| |||||||| |||||||    
T  1524586 ttttgcaactgttattgcgtagttgtt---atgtcacagagaggggagtgaattatgtgatagaaaactgcacacaactgagagagattaatttga 1524678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 257
Target Start/End: Original strand, 7225886 - 7226079
Alignment:
Q  64 atgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttt 163  Q
    |||||||||||||||| | || | || || |||||||||||| ||||||  ||| | ||| ||  |||  |||| || |||| | ||||  |||| ||||    
T  7225886 atgaactttgaagttctcgaattggaggtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttt 7225985  T
Q  164 tgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 257  Q
    ||||||| ||||||||| | |||||| |  |||| ||||||||| ||||||| ||| ||||||| ||||  ||||| |||||||||||||||||    
T  7225986 tgcaactattactggaaagttgttttgaggtcaccgagaagggattgaagcacgtggtagaaaactgcaagcaactgagagagatcaatttgaa 7226079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 256
Target Start/End: Complemental strand, 7307957 - 7307764
Alignment:
Q  63 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggctt 162  Q
    |||||||||| ||||||||||| | || || |||||||||||||||||| | ||| | || ||| ||||  || | ||||||| | ||||  || |||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctt 7307858  T
Q  163 ttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttga 256  Q
    ||||| || ||||||||||| ||||||| | ||||   ||  ||| ||||||||||| ||||||| ||||| ||||| || || ||||||||||    
T  7307857 ttgcacctgttactggaaggttgttttattgtcacgatgactggattgaagcatgtggtagaaaactgcacgcaactgagggaaatcaatttga 7307764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 53761772 - 53761949
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||||||||||| ||||||||| ||||| | |||||||||||||| ||| || ||||||||  ||||||| ||||  ||||| | |  ||| |||||||    
T  53761772 ggaatgaactttgtagttcccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactctgtg--atctcgaagaattgtcgtgggc 53761869  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaa 241  Q
    |||||||| | |||||| ||   |||  |||| |||| || ||||||||||| ||||||  |||||| |||||||||||||    
T  53761870 ttttgcaa-tattactgaaacattgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcacacaactaa 53761949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 55505238 - 55505301
Alignment:
Q  194 tcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 257  Q
    ||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||| |||||    
T  55505238 tcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaa 55505301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 1519143 - 1519193
Alignment:
Q  62 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaa 1519193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 532288 - 532236
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaa 113  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  532288 ggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaa 532236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 640984 - 640821
Alignment:
Q  91 gtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgtttta 190  Q
    ||||||||||||||| ||||||| ||| | || |||||||| |  || | ||||| |  ||||||||| |||||||| || ||||||||||  |||  |     
T  640984 gtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattgtcatt 640885  T
Q  191 atttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaattt 254  Q
    || | ||| ||||||||||||| |||||| ||||||| |||| | || |||||||| |||||||    
T  640884 atgtaacaaagaagggagtgaatcatgtggtagaaaactgcaaagaattaagagaggtcaattt 640821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 659799 - 659733
Alignment:
Q  70 tttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtg 136  Q
    |||||||||||||||||||| ||||||||||||||| |||||| ||||||  | |||||||| ||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaacactatgtg 659733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 1600528 - 1600467
Alignment:
Q  51 gaagctgtgcggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 112  Q
    ||||||| | |||||||||||||||||||  ||||| || ||||||||||||||||||||||    
T  1600528 gaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaa 1600467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 558462 - 558402
Alignment:
Q  196 acagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttga 256  Q
    ||||| || ||||||||||||||||||||||| ||||||||| | ||||| ||||||||||    
T  558462 acagataaaggagtgaagcatgtgctagaaaactgcacacaaatgagagaaatcaatttga 558402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 644797 - 644734
Alignment:
Q  194 tcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 257  Q
    |||| ||||| |||||||| |||||| | ||||||||||||||||| ||||||||| |||||||    
T  644797 tcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaa 644734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 8187090 - 8187269
Alignment:
Q  60 cggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtggg 159  Q
    |||||||||||||||| || ||||||| || ||||||||||||||| ||||||  ||| | ||  ||||||| | || ||| |||| | ||||  |||||    
T  8187090 cggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtggg 8187189  T
Q  160 cttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaact 239  Q
    ||||||||  | |||||||||   |||  |||  |||||| ||||||||||| | ||||| || |||| ||||| |||||    
T  8187190 cttttgcagttgttactggaaaattgtcgtaacgtcacagggaagggagtgatggatgtggtaaaaaactgcacgcaact 8187269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 570446 - 570400
Alignment:
Q  65 tgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 111  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||    
T  570446 tgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 570400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 1548428 - 1548530
Alignment:
Q  65 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggctttt 164  Q
    ||||||||||| |||||||||| || ||||||||||||||| |||||| | || | || ||||||||   ||| ||||||| | ||||  ||||||||||    
T  1548428 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 1548527  T
Q  165 gca 167  Q
    |||    
T  1548528 gca 1548530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 55505108 - 55505178
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacact 131  Q
    ||||||||||||  ||| ||| ||||||| ||||||||||||||||||||||| ||| |||| | ||||||    
T  55505108 ggaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacact 55505178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 553445 - 553384
Alignment:
Q  194 tcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttg 255  Q
    ||||||| || |||||||| |||||| ||||||| ||||||||||| ||||||||| |||||    
T  553445 tcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttg 553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 1545739 - 1545677
Alignment:
Q  194 tcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttga 256  Q
    ||||| |||||||||||||  ||| | || |||| |||||||||||||||| |||||||||||    
T  1545739 tcacatagaagggagtgaaagatgcggtaaaaaactgcacacaactaagagtgatcaatttga 1545677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 570303 - 570254
Alignment:
Q  208 gtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 257  Q
    ||||| |||||| ||||||| ||||||||||| || ||||||||||||||    
T  570303 gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaa 570254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 254
Target Start/End: Original strand, 51113781 - 51113974
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    |||||||||||||||| ||||||||| || |||||  |||||||| ||||||  ||| | || |||||||| | ||| ||||| | | ||||  ||||||    
T  51113781 ggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggc 51113880  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaattt 254  Q
    |||||||||| |||||| ||   ||||   || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  51113881 ttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaattt 51113974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 246
Target Start/End: Original strand, 13470732 - 13470917
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    |||||||||||||  |||||||| || || ||||||||||||||| ||||||| ||||| ||  ||||||| | | | ||||||| |  |||  ||||||    
T  13470732 ggaatgaactttgttgttcccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggc 13470831  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagag 246  Q
    |||||||||| ||||| |||   |||  |||| |||||||  |||||||||| |||||| |||| || |||||||| |||||||||    
T  13470832 ttttgcaactattacttgaactttgtcataatgtcacagaagagggagtgaaacatgtggtagagaactgcacacagctaagagag 13470917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 256
Target Start/End: Original strand, 51120893 - 51121088
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||||||||||||||||| |||| | || ||||||||||||||  ||||||  ||| | || |||| ||| | ||||||||||| | |||| |||||||    
T  51120893 ggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggc 51120992  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttga 256  Q
    |||||||| | |  || ||| | |||||  || ||||| | || |||||||| |||||| ||||||| ||||||||| | |||| |||||| ||||    
T  51120993 ttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttga 51121088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 514861 - 514921
Alignment:
Q  194 tcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaattt 254  Q
    ||||||||| |||||||||||||||| |  |||| ||||||| ||| ||||||||||||||    
T  514861 tcacagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaattt 514921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 51764440 - 51764616
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||||||||||| |||||| || || || |||||  ||||||||| |||||| ||| | ||  ||||||| | ||  ||||||| |  |||  | ||||    
T  51764440 ggaatgaactttgcagttccgaagctggaggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggc 51764539  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaa 237  Q
    |||||||||| |||||||||   |||  |||| |||  |||||||||||||| |||||| | ||||| |||||||||    
T  51764540 ttttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaacatgtggttgaaaactgcacacaa 51764616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 1657346 - 1657299
Alignment:
Q  65 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 112  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 1657299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 1657206 - 1657154
Alignment:
Q  205 ggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 257  Q
    ||||||| ||||||| | ||||||||||||||||| |||||| || |||||||    
T  1657206 ggagtgacgcatgtggttgaaaaatgcacacaactgagagaggtcgatttgaa 1657154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 61 - 252
Target Start/End: Original strand, 18315273 - 18315464
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    |||||||||||| ||||||||||||| || ||||||||||||||| ||||||| ||| | || ||| |||| | ||| ||||||| | |||| ||| |||    
T  18315273 ggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggc 18315372  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaat 252  Q
    |||||||||| ||| ||||| | |||| | || |||||||||| ||||  ||| ||||| ||||||| ||||||||||| | |||| |||||    
T  18315373 ttttgcaactgttattggaacgctgttgtgatgtcacagagaaaggagaaaagtatgtggtagaaaactgcacacaactgatagagctcaat 18315464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 248
Target Start/End: Complemental strand, 27922605 - 27922420
Alignment:
Q  63 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggctt 162  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||||||||| | || ||| |||| | | | ||||||| | ||||  ||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctt 27922506  T
Q  163 ttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagat 248  Q
    ||| || | | ||| |||   |||  | |||||||| ||||||||||||| |||||| ||||||| ||||| ||||| ||| ||||    
T  27922505 ttgaaattgtcacttgaaaattgtaatgatttcacaaagaagggagtgaaccatgtggtagaaaactgcactcaactgagaaagat 27922420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 256
Target Start/End: Original strand, 34936164 - 34936358
Alignment:
Q  62 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggct 161  Q
    |||||| |||||| ||||| |||||||| |||||| |||||||||||||||  ||| | ||  ||||||| | ||  ||| ||| | |||| ||||||||    
T  34936164 gaatgatctttgatgttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggct 34936263  T
Q  162 tttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttga 256  Q
    ||||||||| |||||  ||   |||| | || |||| |||||||||||  ||| |||| | ||||| ||||||||| | || |||||||||||||    
T  34936264 tttgcaactattacttcaaaattgttgtgatgtcacggagaagggagttgagcgtgtggttgaaaattgcacacaattgagggagatcaatttga 34936358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 21235663 - 21235607
Alignment:
Q  55 ctgtgcggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 111  Q
    ||||| ||| |||||||||||||||||||||| || |||||||||||||||||||||    
T  21235663 ctgtgtggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatataca 21235607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 17636402 - 17636576
Alignment:
Q  62 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggct 161  Q
    ||||||||||||||||||||||| | || ||||||||||||||| | |||   ||| |||| ||| || ||| ||| ||||||| | |||| | | | ||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgtcttagact 17636501  T
Q  162 tttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaa 237  Q
    ||||||| | | ||| |||   ||| ||||| |||| ||||| ||||||| ||||||||||||||| |||||||||    
T  17636502 tttgcaattgtcacttgaatattgtgttaatgtcac-gagaaaggagtgaggcatgtgctagaaaattgcacacaa 17636576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 28246299 - 28246346
Alignment:
Q  65 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 112  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  28246299 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 28246346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 28246438 - 28246489
Alignment:
Q  206 gagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 257  Q
    |||||| ||||||| | ||||||||||||||||| |||||| ||||||||||    
T  28246438 gagtgacgcatgtggttgaaaaatgcacacaactgagagaggtcaatttgaa 28246489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 170
Target Start/End: Complemental strand, 32151410 - 32151291
Alignment:
Q  51 gaagctgtgcggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgt 150  Q
    ||||||| | ||||||||||| |||||| |||| || || ||||| |||||||||| |||||   || | || |||||||| | ||| ||||||| | ||    
T  32151410 gaagctgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagt 32151311  T
Q  151 tgccgtgggcttttgcaact 170  Q
    ||  ||||||||||||||||    
T  32151310 tgtagtgggcttttgcaact 32151291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 44736511 - 44736444
Alignment:
Q  184 tgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaa 251  Q
    |||| |||| |||||  |||||||||||| |||||  ||||||| || ||||||||||||||||||||    
T  44736511 tgttataatgtcacaacgaagggagtgaaacatgttgtagaaaattgtacacaactaagagagatcaa 44736444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 21235510 - 21235461
Alignment:
Q  208 gtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 257  Q
    ||||| |||||| ||||||| ||||||||||| || ||||||||||||||    
T  21235510 gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaa 21235461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 256
Target Start/End: Original strand, 45245085 - 45245280
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||| |||||||||||||| ||||| || |||||||| |||||| | ||||  ||| | || ||||||||   ||| ||||||| | |||| |||||||    
T  45245085 ggaataaactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggc 45245184  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttga 256  Q
    |||||||||| ||| || ||   |||| | || ||||||| ||||||||||| |||||| ||||||| ||||||||||| | ||||||||||||||    
T  45245185 ttttgcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttga 45245280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 32785773 - 32785823
Alignment:
Q  62 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 112  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||| ||||||    
T  32785773 gaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaa 32785823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 248
Target Start/End: Complemental strand, 6402959 - 6402772
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||| |||| || ||| | || |||||||| | ||| ||||||| |  |||  ||||||    
T  6402959 ggaataaactttgcagttccccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggc 6402860  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagat 248  Q
    ||||| |||| ||| ||  ||  |||| |||| ||||||| ||||||| ||| |||||| ||||||| || |||||||| ||||||||    
T  6402859 ttttgaaactattattgagagattgttataatgtcacagaaaagggagcgaaacatgtgatagaaaactgtacacaactgagagagat 6402772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 6416065 - 6415880
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    |||||| |||||| ||||||||| || || ||||||||||||||| ||||||| ||||| ||  |||| || | ||| ||||||| |  |||  | ||||    
T  6416065 ggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggc 6415966  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagag 246  Q
    |||||||||| ||||| |||   |||  |||| |||||||   ||||||||| |||||| |||| || ||||||||||||||||||    
T  6415965 ttttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaactgcacacaactaagagag 6415880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 9411450 - 9411260
Alignment:
Q  65 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggctttt 164  Q
    |||||||||| |||||||| || || |||||||||||||||||||||  ||||  ||| |||| ||| | ||  ||||||| |  ||| ||||| |||||    
T  9411450 tgaactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggactttt 9411351  T
Q  165 gcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttg 255  Q
    |||||| |||||| || | |||  |||| ||| ||| |||||||||| ||||||| ||| ||| |||   ||||| | |||||||||||||    
T  9411350 gcaactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttg 9411260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 19632538 - 19632360
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||| ||||||  ||||||||| ||||| |||||| ||||||| |||||||| ||| | || ||   ||| | ||| ||||||| |  |||  ||||||    
T  19632538 ggaataaactttctagttcccaagctagaggtgttggacttgtcgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggc 19632439  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaact 239  Q
    ||||||||||||||||| ||   |||  |||| ||||||||||||||||||| || ||| ||||||| |||| ||||||    
T  19632438 ttttgcaactcttactgaaaaattgtgctaatatcacagagaagggagtgaaacacgtggtagaaaactgcaaacaact 19632360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 6432260 - 6432084
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||||||||||||||||||||| ||  | ||||||||||||||| ||||||  ||| | || |||||||| | ||| |||| || |  |||  ||||||    
T  6432260 ggaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggc 6432161  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaa 237  Q
    || ||||||| || ||| |    |||  |||| ||||| ||||||||||||| | |||| |||||||||||||||||    
T  6432160 ttctgcaactattcctgtacaattgtgataatgtcacacagaagggagtgaaacttgtggtagaaaaatgcacacaa 6432084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 7994182 - 7994369
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||||||||||| |||||| || ||||| ||||||||| ||||| ||||||  ||||| ||||||||||| | ||| ||||||| |  |||   ||| |    
T  7994182 ggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggac 7994281  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagat 248  Q
    |||||||||| ||||| |||   |||  | || | || ||| |||||||||| |||||| ||||||| ||||| ||||| | ||||||    
T  7994282 ttttgcaactattacttgaactttgtaatgatgttaccgaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagat 7994369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 28935004 - 28934954
Alignment:
Q  205 ggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttg 255  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  28935004 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 28934954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 6585270 - 6585415
Alignment:
Q  94 ttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgttttaatt 193  Q
    |||||||||||| ||||||| ||| | || |||||||| | ||| ||||||| | ||||   || ||||||| |||| |||||| |||| |||   |||     
T  6585270 ttgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatg 6585369  T
Q  194 tcacagagaagggagtgaagcatgtgctagaaaaatgcacacaact 239  Q
    |||||||||||||| |||| |||||| ||||||  |||||||||||    
T  6585370 tcacagagaagggactgaaacatgtggtagaaatttgcacacaact 6585415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 6423314 - 6423196
Alignment:
Q  63 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggctt 162  Q
    |||||||||| |||||||||| || || ||||||||||||||| ||||||  |||| |||  ||||||| | ||  ||||||| | ||||  ||||| ||    
T  6423314 aatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggatt 6423215  T
Q  163 ttgcaactcttactggaag 181  Q
    |||||||| ||||| ||||    
T  6423214 ttgcaactattacttgaag 6423196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 6589323 - 6589381
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaa 119  Q
    ||||||||||||| ||||||||  || || ||||||||||||||| |||||||||||||    
T  6589323 ggaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaatacaaatgttaa 6589381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 12102361 - 12102315
Alignment:
Q  65 tgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 111  Q
    |||||||||||||||||||||| || ||||||||||||||| |||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 11936279 - 11936326
Alignment:
Q  65 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 112  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 11936326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 11948259 - 11948306
Alignment:
Q  65 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 112  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 11948306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 10579870 - 10579924
Alignment:
Q  194 tcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagat 248  Q
    ||||| |||||||||| || |||||| ||||||| ||||||||||| ||||||||    
T  10579870 tcacaaagaagggagttaaacatgtggtagaaaactgcacacaacttagagagat 10579924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 255
Target Start/End: Complemental strand, 14820792 - 14820598
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||| ||||||| |||||||||  |||| ||||||||||| ||| ||||||| ||| |  | |||||||| | | | ||||| | |  |||  ||||||    
T  14820792 ggaattaactttgcagttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggc 14820693  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttg 255  Q
    |||||| | | ||||| |||   |||  | || ||||||||||||| ||||| |||||| || |||| |||||||| || |||||||| ||||||    
T  14820692 ttttgcgattattacttgaaaaatgtaatgatgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttg 14820598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 6603204 - 6603389
Alignment:
Q  63 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggctt 162  Q
    ||||||||||| | ||||||| ||| | |||||| ||||| || |||||  |||| | || |||||| | | ||  ||||||| | |||| | |||||||    
T  6603204 aatgaactttgtacttcccaagctacaggtgttggacttggcagatacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggctt 6603303  T
Q  163 ttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagat 248  Q
    ||| |||| ||| || ||   |||| | || |||||||||| |||||||| |||||| ||||||| |||| |||||| ||| ||||    
T  6603304 ttggaactattattgaaatattgttattatgtcacagagaaaggagtgaaacatgtggtagaaaactgcaaacaactgagaaagat 6603389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 14802429 - 14802365
Alignment:
Q  67 aactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacact 131  Q
    |||||||||||||||||  | ||||||||||| |||||| ||||||| ||| | || ||||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacact 14802365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 255
Target Start/End: Original strand, 15092151 - 15092345
Alignment:
Q  61 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 160  Q
    ||||||||||||| ||||||| | || || |||||||| |||||| | ||||| ||||| ||  ||||||| | ||  ||||||| |  |||  ||||||    
T  15092151 ggaatgaactttgcagttcccgagctggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggc 15092250  T
Q  161 ttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttg 255  Q
    |||||||||| ||||| |||   |||| |||| |||||||   ||||||||| |||||||||||||| ||||||||| | |||||||| ||||||    
T  15092251 ttttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttg 15092345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 256
Target Start/End: Complemental strand, 9586729 - 9586543
Alignment:
Q  70 tttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaac 169  Q
    |||||||| ||||| ||||| ||||||||||||||||||||| ||||||| || |||||||| | ||| | |||||||  ||| ||||| |||||||| |    
T  9586729 tttgaagtccccaagctagaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaatgaattgtcgtggacttttgcatc 9586630  T
Q  170 tcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttga 256  Q
    | |||| | ||   |||| | || |||||   || ||| |||||| |||| ||||||| |||||||| |||| ||| ||| ||||||    
T  9586629 ttttacagaaaaattgttatcatgtcacaagcaatggattgaagcgtgtggtagaaaattgcacacatctaaaagaaatcgatttga 9586543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 255
Target Start/End: Complemental strand, 7554554 - 7554393
Alignment:
Q  94 ttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgttttaatt 193  Q
    |||||||| |||||||||| |||| | || ||| |||| | | | ||||||| | ||||  |||| ||||| ||||| |||||| |||| |||  ||||     
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatg 7554455  T
Q  194 tcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttg 255  Q
    ||||||| |||||||||||||||||| ||||||| ||||| | ||| | |||||| ||||||    
T  7554454 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 7554393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 29719017 - 29719123
Alignment:
Q  155 gtgggcttttgcaactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaattt 254  Q
    |||| ||||||||| | ||||||||| | ||| | ||| |||||||||| |||||||| |||||| |  |||| ||||  ||||| || |||||||||||    
T  29719017 gtggccttttgcaattgttactggaaagttgtatgaatgtcacagagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaattt 29719116  T
Q  255 gaaatat 261  Q
    || ||||    
T  29719117 gagatat 29719123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 43634132 - 43634082
Alignment:
Q  207 agtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 257  Q
    ||||||||| ||| ||||||| |||| |||||||||||||||||| |||||    
T  43634132 agtgaagcacgtgttagaaaattgcagacaactaagagagatcaacttgaa 43634082  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 41901542 - 41901701
Alignment:
Q  68 actttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgca 167  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||| | || ||| |||| | | | ||||||| | ||||  |||| |||||| |    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaa 41901641  T
Q  168 actcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaa 227  Q
    | | | |||  |||  |||  | || ||||| |||||||||||||||||||| |||||||    
T  41901642 attgtcacttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaaa 41901701  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 255
Target Start/End: Original strand, 38267562 - 38267750
Alignment:
Q  67 aactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgc 166  Q
    ||||||||||||||||| || || |||||| ||||| || ||||||  ||| | || || ||||| | ||||||||||| |   |||||||||||||||     
T  38267562 aactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggcttttga 38267661  T
Q  167 aactcttactggaagggtgttttaatttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttg 255  Q
    |||| |  ||| ||   |||   ||| |||| ||||||||||||| ||||||| |  |||| |||||| |||| |||||||||||||||    
T  38267662 aactgtcgctgcaactttgtacgaatgtcaccgagaagggagtgatgcatgtggtcaaaaactgcacaaaactcagagagatcaatttg 38267750  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 20478112 - 20478189
Alignment:
Q  91 gtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaa 168  Q
    ||||||||||||||||||||||||||| | ||||||||| | | ||| ||||||| |  |||  ||||||||||||||    
T  20478112 gtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaa 20478189  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 41889556 - 41889624
Alignment:
Q  63 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacgacgaaacact 131  Q
    |||||||||| ||||||||||| | || ||||||||||| ||||||||||| ||| | || ||||||||    
T  41889556 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacact 41889624  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 12845557 - 12845497
Alignment:
Q  196 acagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatttga 256  Q
    |||||||||||||||| ||| ||| ||| |||||||||| |  | ||||||||||||||||    
T  12845557 acagagaagggagtgaggcaagtggtagcaaaatgcacaaagttgagagagatcaatttga 12845497  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 32267441 - 32267381
Alignment:
Q  194 tcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaattt 254  Q
    ||||| |||||||||||||||||||  ||||||| ||||| ||||| ||| |||| |||||    
T  32267441 tcacaaagaagggagtgaagcatgtagtagaaaactgcacgcaacttagaaagattaattt 32267381  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 253
Target Start/End: Complemental strand, 39253 - 39091
Alignment:
Q  91 gtgttgaacttgtcatatacaaatgttaacgacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgtttta 190  Q
    |||||||||||| ||| |||||| ||||| || |||||||| | ||| ||||||| | ||||  ||||||||||||| ||  ||||||||   |||| |     
T  39253 gtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgcacctgatactggaaaaatgttctc 39154  T
Q  191 atttcacagagaagggagtgaagcatgtgctagaaaaatgcacacaactaagagagatcaatt 253  Q
     | |||||  |||||||||||| |||||| || | || ||||| ||||| |||||||| ||||    
T  39153 gtgtcacaatgaagggagtgaaacatgtggtaaacaactgcacgcaactgagagagattaatt 39091  T

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Target: scaffold0807 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 1466 - 1520
Alignment:
Q  63 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgtt 117  Q
    ||||||||||| |||||| || ||||| |||||| |||||||| |||||||||||    
T  1466 aatgaactttgtagttcctaagctagaggtgttggacttgtcaaatacaaatgtt 1520  T

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