View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1977_low_9 (Length: 266)

Name: NF1977_low_9
Description: NF1977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1977_low_9
NF1977_low_9
[»] chr4 (12 HSPs)
chr4 (10-248)||(15056067-15056305)
chr4 (16-248)||(54072355-54072592)
chr4 (10-248)||(1084451-1084694)
chr4 (10-248)||(21398353-21398596)
chr4 (10-248)||(5926963-5927205)
chr4 (10-248)||(10489481-10489724)
chr4 (10-248)||(17194791-17195034)
chr4 (10-248)||(49545530-49545773)
chr4 (63-248)||(45108013-45108200)
chr4 (10-248)||(14678194-14678437)
chr4 (10-248)||(27181913-27182158)
chr4 (10-43)||(45108226-45108259)
[»] chr7 (8 HSPs)
chr7 (10-248)||(11806075-11806316)
chr7 (10-248)||(3523786-3524029)
chr7 (10-248)||(10268066-10268309)
chr7 (10-248)||(32592208-32592451)
chr7 (10-248)||(25519573-25519816)
chr7 (10-248)||(336642-336886)
chr7 (10-142)||(4122131-4122265)
chr7 (10-138)||(43311270-43311401)
[»] chr6 (4 HSPs)
chr6 (10-248)||(5309200-5309441)
chr6 (10-248)||(14220087-14220330)
chr6 (10-248)||(30702964-30703207)
chr6 (10-43)||(21351231-21351264)
[»] chr2 (7 HSPs)
chr2 (10-248)||(43380025-43380266)
chr2 (10-248)||(2273699-2273942)
chr2 (10-248)||(12534075-12534318)
chr2 (10-248)||(7355372-7355618)
chr2 (10-248)||(3536013-3536257)
chr2 (10-104)||(30112048-30112145)
chr2 (10-104)||(30123335-30123432)
[»] scaffold0129 (1 HSPs)
scaffold0129 (10-248)||(37928-38171)
[»] chr8 (10 HSPs)
chr8 (10-248)||(9312420-9312663)
chr8 (10-248)||(35217530-35217773)
chr8 (10-248)||(42990066-42990312)
chr8 (10-248)||(32741076-32741320)
chr8 (63-248)||(23716154-23716341)
chr8 (63-248)||(44501410-44501597)
chr8 (10-248)||(16727051-16727293)
chr8 (10-248)||(38224286-38224521)
chr8 (10-43)||(12773510-12773543)
chr8 (10-43)||(44501350-44501383)
[»] chr1 (7 HSPs)
chr1 (10-248)||(16640683-16640926)
chr1 (10-248)||(41775027-41775270)
chr1 (10-248)||(29650670-29650913)
chr1 (10-248)||(8363527-8363773)
chr1 (63-248)||(22146629-22146816)
chr1 (10-178)||(7391002-7391173)
chr1 (10-42)||(22146573-22146605)
[»] chr5 (7 HSPs)
chr5 (16-248)||(3616403-3616640)
chr5 (10-248)||(43489187-43489430)
chr5 (10-248)||(2027563-2027806)
chr5 (10-248)||(23416780-23417022)
chr5 (10-248)||(37037633-37037877)
chr5 (63-248)||(37827489-37827676)
chr5 (10-43)||(37827431-37827464)
[»] chr3 (8 HSPs)
chr3 (16-248)||(34946642-34946879)
chr3 (10-248)||(38517021-38517264)
chr3 (10-248)||(44552159-44552402)
chr3 (10-170)||(3863610-3863773)
chr3 (16-115)||(27644403-27644505)
chr3 (60-99)||(28392799-28392838)
chr3 (10-43)||(20395016-20395049)
chr3 (10-42)||(49529790-49529822)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 15056305 - 15056067
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnntatattacactattgaaatatgattcaatagttgtctgttttcctttaaagttcaagtc 109  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15056305 aagaaaatcataaattaataattcatagaaactgaaaaaaaaatattacactattgaaatatgattcaatagttgtctgttttcctttaaagttcaagtc 15056206  T
Q  110 tgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaagaatttgacgccataag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15056205 tgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaagaattcgacgccataag 15056106  T
Q  210 tgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    |||||||||||||||||||| ||||||||| || |||||    
T  15056105 tgcttcctttcgtgtaacagactccaaagacaccgtatc 15056067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 54072592 - 54072355
Alignment:
Q  16 atcataaattaataattcatagaaactgnnnnnnn-tatattacact--attgaaatatgattcaatagttgtctgttttcctttaaagttcaagtctgt 112  Q
    ||||||||||||||||||||||||||||        |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54072592 atcataaattaataattcatagaaactgaaaaaaaatatattacactctattgaaatatgattcaatagttgtctgttttcctttaaagttcaagtctgt 54072493  T
Q  113 ttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgccataagt 210  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||    
T  54072492 tttgagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgccataagt 54072393  T
Q  211 gcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||| |||| |||||||||||| ||||||||    
T  54072392 gcttcctttcgcgtaataggctccaaagacactgtatc 54072355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 1084451 - 1084694
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  1084451 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 1084550  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  1084551 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 1084650  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  1084651 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 1084694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 21398596 - 21398353
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  21398596 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 21398497  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  21398496 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 21398397  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  21398396 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 21398353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 5927205 - 5926963
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnntatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaag 107  Q
    ||||| ||||||||||||||||||||||||||||        |||||||||| |  |||||||||||||||||||||| |||||||||||||| ||||||    
T  5927205 aagaaaatcataaattaataattcatagaaactgaaaaaaaaatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaaattcaag 5927106  T
Q  108 tctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcca 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || |||||||    
T  5927105 tctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcca 5927006  T
Q  206 taagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    |||||||||||||||| ||||||||||||||||| || |||||    
T  5927005 taagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 5926963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 10489724 - 10489481
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  10489724 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 10489625  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||   || ||||||    
T  10489624 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttttgaagagtcttcgacgcc 10489525  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  10489524 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 10489481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 17194791 - 17195034
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  17194791 aagaaaatcataaattaataattcatagaaactgaaaaaatatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 17194890  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  17194891 gtatgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 17194990  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  17194991 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 17195034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 49545530 - 49545773
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  ||||||||||| |||||||||| ||||||||||||||||||||    
T  49545530 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgatccaatagttgtttgttttcctttaaagttcaa 49545629  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  49545630 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 49545729  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  49545730 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 49545773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 63 - 248
Target Start/End: Complemental strand, 45108200 - 45108013
Alignment:
Q  63 ttgaaatatgattcaatagttgtctgttttcctttaaagttcaagtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttg 162  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45108200 ttgaaatatgattcaatagttgtttgttttcctttaaagttcaagtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttg 45108101  T
Q  163 tatttttgtattgtatcataaagttgtgaaga--atttgacgccataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  45108100 tatttttgtattgtatcataaagttgtgaagagtgttcgacgccataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 45108013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 14678437 - 14678194
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||| ||| ||||||||||||||||||||    
T  14678437 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagctgtttgttttcctttaaagttcaa 14678338  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    || |||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||   || ||||||    
T  14678337 gtatgtttggagctcatctctaacttttcttattgcatccaatagccgagatgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 14678238  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  14678237 ataagtgcttcctttcgcgtaacaggctccaaagacactgtatc 14678194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 27181913 - 27182158
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn---tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttc 104  Q
    ||||| ||||||||||||||||||||||||||||          ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||    
T  27181913 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttc 27182012  T
Q  105 aagtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacg 202  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||    
T  27182013 aagtttgtttgaagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacg 27182112  T
Q  203 ccataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||    
T  27182113 ccataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 27182158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 45108259 - 45108226
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactg 43  Q
    ||||| ||||||||||||||||||||||||||||    
T  45108259 aagaaaatcataaattaataattcatagaaactg 45108226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 11806316 - 11806075
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnnt-atattacactattgaaatatgattcaatagttgtctgttttcctttaaagttcaagt 108  Q
    ||||| ||||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11806316 aagaaaatcataaattaataattcatagaaactgaaaaaaattatattacactattgaaatatgattcaatagttgtctgttttcctttaaagttcaagt 11806217  T
Q  109 ctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgccat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   || ||||||||    
T  11806216 ctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtattgtatttttgtattgtatcataaagttgtgaagagtgttcgacgccat 11806117  T
Q  207 aagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  11806116 aagtgcttcctttcgtgtaacaggctccaaagacaccgtatc 11806075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 3524029 - 3523786
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  3524029 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 3523930  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  3523929 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 3523830  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  3523829 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 3523786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 10268066 - 10268309
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnnta-tattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        | ||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  10268066 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 10268165  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  10268166 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 10268265  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  10268266 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 10268309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 32592451 - 32592208
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnnta-tattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        | ||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  32592451 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 32592352  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  32592351 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 32592252  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  32592251 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 32592208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 25519816 - 25519573
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnnta-tattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        | ||||||||| |  |||||||||||| ||||||||| ||||||||||||||||||||    
T  25519816 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaatattacactttgttgaaatatgatttaatagttgtttgttttcctttaaagttcaa 25519717  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  25519716 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 25519617  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  25519616 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 25519573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 336886 - 336642
Alignment:
Q  10 aagaatatcataaattaataattcatagaaact---gnnnnnnntatattacac--tattgaaatatgattcaatagttgtctgttttcctttaaagttc 104  Q
    ||||| |||||||||||||||||||||||||||   |        |||||||||  | ||||||||||||||||||||||| ||||||||||||||||||    
T  336886 aagaaaatcataaattaataattcatagaaactgaagaaaaaaaaatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttc 336787  T
Q  105 aagtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||   || ||||    
T  336786 aagtctgtttggagctcatctctaacttttcttattgcatccaatagttgaggt-ttgtatttttgtattgtatcataaagttgtgaagagtgttcgacg 336688  T
Q  203 ccataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  336687 ccataagtgcttcctttcgcgtaacaggctccaaagacactgtatc 336642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 4122265 - 4122131
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnnta--tattacactattgaaatatgattcaatagttgtctgttttcctttaaagttcaag 107  Q
    ||||| ||||||||||||||||||||||||||||        |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122265 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaaatattacactattgaaatatgattcaatagttgtctgttttcctttaaagttcaag 4122166  T
Q  108 tctgtttggagctcatctctaacttttcttattgc 142  Q
    |||||||||||||||||||||||||||||||||||    
T  4122165 tctgtttggagctcatctctaacttttcttattgc 4122131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 43311270 - 43311401
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  43311270 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 43311369  T
Q  107 gtctgtttggagctcatctctaacttttctta 138  Q
    ||||||||||||||||||||||||||||||||    
T  43311370 gtctgtttggagctcatctctaacttttctta 43311401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 5309200 - 5309441
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnnt-atattacactattgaaatatgattcaatagttgtctgttttcctttaaagttcaagt 108  Q
    ||||| ||||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5309200 aagaaaatcataaattaataattcatagaaactgaaaaaaattatattacactattgaaatatgattcaatagttgtctgttttcctttaaagttcaagt 5309299  T
Q  109 ctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgccat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   || ||||||||    
T  5309300 ctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattatatcataaagttgtgaagagtgttcgacgccat 5309399  T
Q  207 aagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  5309400 aagtgcttcctttcgtgtaacaggctccaaagacaccgtatc 5309441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 14220330 - 14220087
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  14220330 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 14220231  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaagaattt--gacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| |||  ||||||    
T  14220230 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtattataaagttttgaagagttttcgacgcc 14220131  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| |||||||||| |||||| || |||||    
T  14220130 ataagtgcttcctttcgcgtaacaggcttcaaagacaccgtatc 14220087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 30702964 - 30703207
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  30702964 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 30703063  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  30703064 gtctgtttagagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 30703163  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    |||| |||||||||||| ||||||||||||||||| || |||||    
T  30703164 ataaatgcttcctttcgcgtaacaggctccaaagacaccgtatc 30703207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 21351231 - 21351264
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactg 43  Q
    ||||| ||||||||||||||||||||||||||||    
T  21351231 aagaaaatcataaattaataattcatagaaactg 21351264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 43380025 - 43380266
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnnt-atattacactattgaaatatgattcaatagttgtctgttttcctttaaagttcaagt 108  Q
    ||||| |||||||||||||||||||||||||||        | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43380025 aagaaaatcataaattaataattcatagaaactaaaaaaaattatattacactactgaaatatgattcaatagttgtctgttttcctttaaagttcaagt 43380124  T
Q  109 ctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgccat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||    
T  43380125 ctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgccat 43380224  T
Q  207 aagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||| ||||||||||||||||||||||||||| || |||||    
T  43380225 aagtgtttcctttcgtgtaacaggctccaaagacaccgtatc 43380266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 2273942 - 2273699
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  2273942 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 2273843  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  2273842 gtcagtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 2273743  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  2273742 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 2273699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 12534318 - 12534075
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| |||||||||||||||||||||||||||         ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  12534318 aagaaaatcataaattaataattcatagaaacttaaaaaaaatatattacactttgatgaaatatgattcaatagttgtttgttttcctttaaagttcaa 12534219  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  12534218 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 12534119  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  12534118 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 12534075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 7355372 - 7355618
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn----tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagtt 103  Q
    ||||| ||||||||||||||||||||||||||||           ||||||||||| |  |||||||||||||||||||||| |||||||||||||||||    
T  7355372 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagtt 7355471  T
Q  104 caagtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgac 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || |||    
T  7355472 caagtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgac 7355571  T
Q  202 gccataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    |||||||||||||||||||| ||||||||||||||||| || |||||    
T  7355572 gccataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 7355618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 3536257 - 3536013
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  3536257 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 3536158  T
Q  107 gtctgtttggagctca-tctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgc 203  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || |||||    
T  3536157 gtctgtttggagctcaatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgc 3536058  T
Q  204 cataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    |||||||| ||||||||| ||||||||||||||||| || |||||    
T  3536057 cataagtgtttcctttcgcgtaacaggctccaaagacaccgtatc 3536013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 30112048 - 30112145
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttc 104  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||    
T  30112048 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttc 30112145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 30123335 - 30123432
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttc 104  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||    
T  30123335 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttc 30123432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 37928 - 38171
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  37928 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 38027  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  38028 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 38127  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  38128 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 38171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 9312420 - 9312663
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnnta-tattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        | ||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  9312420 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 9312519  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  9312520 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 9312619  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  9312620 ataagtgcttcctttcgcgtaacaggctccaaagacactgtatc 9312663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 35217773 - 35217530
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  35217773 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 35217674  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  35217673 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 35217574  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  35217573 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 35217530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 42990312 - 42990066
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn----tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagtt 103  Q
    ||||| ||||||||||||||||||||||||||||           ||||||||||| |  |||||||||||||||||||||| |||||||||||||||||    
T  42990312 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagtt 42990213  T
Q  104 caagtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgac 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || |||    
T  42990212 caagtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgac 42990113  T
Q  202 gccataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    |||||||||||||||||||| ||||||||||||||||| || |||||    
T  42990112 gccataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 42990066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 32741076 - 32741320
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn--tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttca 105  Q
    ||||| ||||||||||||||||||||| ||||||         ||||||||||| |  |||||||||||||||||||||| |||||||||||||||||||    
T  32741076 aagaaaatcataaattaataattcataaaaactgaaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttca 32741175  T
Q  106 agtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgc 203  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || |||||    
T  32741176 agtctgtttagagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgc 32741275  T
Q  204 cataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    |||||||||||||||||| ||||||||||||||||| || |||||    
T  32741276 cataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 32741320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 23716154 - 23716341
Alignment:
Q  63 ttgaaatatgattcaatagttgtctgttttcctttaaagttcaagtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttg 162  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23716154 ttgaaatatgattcaatagttgtttgttttcctttaaagttcaagtttgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttg 23716253  T
Q  163 tatttttgtattgtatcataaagttgtgaaga--atttgacgccataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  23716254 tatttttgtattgtatcataaagttgtgaagagtgttcgacgccataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 23716341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 44501410 - 44501597
Alignment:
Q  63 ttgaaatatgattcaatagttgtctgttttcctttaaagttcaagtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttg 162  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44501410 ttgaaatatgattcaatagttgtttgttttcctttaaagttcaagtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttg 44501509  T
Q  163 tatttttgtattgtatcataaagttgtgaaga--atttgacgccataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||||||||||||||||||   || |||||||||| |||||||||||| ||||||||||||||||| || |||||    
T  44501510 tatttttgtattgtatcataaagttgtgaagagtgttcgacgccataaatgcttcctttcgcgtaacaggctccaaagacaccgtatc 44501597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 16727051 - 16727293
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||| ||||||||||||    
T  16727051 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttc-tttaaagttcaa 16727149  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  16727150 gtctgtttggagctcatctttaacttttcttattgcatcaaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 16727249  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    |||||||||| |||||| ||||||||||||||||| || |||||    
T  16727250 ataagtgctttctttcgcgtaacaggctccaaagacaccgtatc 16727293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 38224521 - 38224286
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||        ||||||||    
T  38224521 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgtt--------aagttcaa 38224430  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  38224429 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 38224330  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  38224329 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 38224286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 12773543 - 12773510
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactg 43  Q
    ||||| ||||||||||||||||||||||||||||    
T  12773543 aagaaaatcataaattaataattcatagaaactg 12773510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 44501350 - 44501383
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactg 43  Q
    ||||| ||||||||||||||||||||||||||||    
T  44501350 aagaaaatcataaattaataattcatagaaactg 44501383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 16640683 - 16640926
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  16640683 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 16640782  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  16640783 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 16640882  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  16640883 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 16640926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 41775270 - 41775027
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  41775270 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 41775171  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  41775170 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 41775071  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  41775070 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 41775027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 29650913 - 29650670
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  29650913 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 29650814  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  29650813 gtatgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 29650714  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  29650713 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 29650670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 8363773 - 8363527
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn----tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagtt 103  Q
    ||||| ||||||||||||||||||||||||||||           ||||||||||| |  |||||||||||||||||||||| |||||||||||||||||    
T  8363773 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagtt 8363674  T
Q  104 caagtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgac 201  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || |||    
T  8363673 caagtttgtttgaagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgac 8363574  T
Q  202 gccataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    |||||||||||||||||||| ||||||||||||||||| || |||||    
T  8363573 gccataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 8363527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 22146629 - 22146816
Alignment:
Q  63 ttgaaatatgattcaatagttgtctgttttcctttaaagttcaagtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttg 162  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      
T  22146629 ttgaaatatgattcaatagttgtttgttttcctttaaagttcaagtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgtca 22146728  T
Q  163 tatttttgtattgtatcataaagttgtgaaga--atttgacgccataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  22146729 tatttttgtattgtatcataaagttgtgaagagtgttcgacgccataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 22146816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 7391173 - 7391002
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnnta-tattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        | ||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  7391173 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 7391074  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7391073 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtat 7391002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 22146573 - 22146605
Alignment:
Q  10 aagaatatcataaattaataattcatagaaact 42  Q
    ||||| |||||||||||||||||||||||||||    
T  22146573 aagaaaatcataaattaataattcatagaaact 22146605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 3616640 - 3616403
Alignment:
Q  16 atcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaagtctgt 112  Q
    ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3616640 atcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaagtctgt 3616541  T
Q  113 ttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgccataagt 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||||||||    
T  3616540 ttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgccataagt 3616441  T
Q  211 gcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||| ||||||||||||||||| || |||||    
T  3616440 gcttcctttcgcgtaacaggctccaaagacaccgtatc 3616403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 43489430 - 43489187
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  43489430 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 43489331  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  43489330 gtctgtttggagctcatctctaacttttcttattgcatccaatagctaaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 43489231  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| |||||||||| |||||| || |||||    
T  43489230 ataagtgcttcctttcgcgtaacaggcttcaaagacaccgtatc 43489187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 2027806 - 2027563
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||| ||||||| ||||||||||||||||||||    
T  2027806 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcagtagttgtttgttttcctttaaagttcaa 2027707  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  2027706 gtctatttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 2027607  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  2027606 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 2027563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 23417022 - 23416780
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnntatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaag 107  Q
    ||||| |||||||||||||||||||||||||||         |||||||||| |  |||||||||||||||||||||| |||||||||||||||||||||    
T  23417022 aagaaaatcataaattaataattcatagaaactaaaaaaaaaatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaag 23416923  T
Q  108 tctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcca 205  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || |||||||    
T  23416922 tctgtttggagctcatctctaactttgcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcca 23416823  T
Q  206 taagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||| |||||| ||||||||||||||||| || |||||    
T  23416822 taagtgctttctttcgcgtaacaggctccaaagacaccgtatc 23416780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 37037633 - 37037877
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn--tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttca 105  Q
    ||||| ||||||||||||||||||||||||||||         ||||||||||| |  |||||||||||||||||||||| ||||||| |||||||||||    
T  37037633 aagaaaatcataaattaataattcatagaaactgaaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcttttaaagttca 37037732  T
Q  106 agtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || |||||    
T  37037733 agtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgc 37037832  T
Q  204 cataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    |||||||||||||||||| |||||| |||||||||| || |||||    
T  37037833 cataagtgcttcctttcgcgtaacatgctccaaagacaccgtatc 37037877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 37827489 - 37827676
Alignment:
Q  63 ttgaaatatgattcaatagttgtctgttttcctttaaagttcaagtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttg 162  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37827489 ttgaaatatgattcaatagttgtttgttttcctttaaagttcaagtctatttggagctcatctctaacttttcttattgcatccaatagctgaggtgttg 37827588  T
Q  163 tatttttgtattgtatcataaagttgtgaaga--atttgacgccataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  37827589 tatttttgtattgtatcataaagttgtgaagagtgttcgacgccataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 37827676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 37827431 - 37827464
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactg 43  Q
    ||||| ||||||||||||||||||||||||||||    
T  37827431 aagaaaatcataaattaataattcatagaaactg 37827464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 34946879 - 34946642
Alignment:
Q  16 atcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaagtctgt 112  Q
    ||||||||||||||||||||||||||||        ||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34946879 atcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaagtctgt 34946780  T
Q  113 ttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgccataagt 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||||||||    
T  34946779 ttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgccataagt 34946680  T
Q  211 gcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||| ||||||||||||||||| || |||||    
T  34946679 gcttcctttcgcgtaacaggctccaaagacaccgtatc 34946642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 38517021 - 38517264
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        ||||||||||| |  ||||||||||||||||| |||| ||||||||||||||||||||    
T  38517021 aagaaaatcataaattaataattcatagaaactgaaaaaaaatatattacactttgttgaaatatgattcaataattgtttgttttcctttaaagttcaa 38517120  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  38517121 gtccgtttggagctcatctctaacttttcttattgcatccaatagctaaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 38517220  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  38517221 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 38517264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 44552159 - 44552402
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnn-tatattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||| ||||||||||        ||||||||||| |  ||||| |||||||||||||||| ||||||||||||||||||||    
T  44552159 aagaaaatcataaattaataatttatagaaactgaaaaaaaatatattacactttgttgaaaaatgattcaatagttgtttgttttcctttaaagttcaa 44552258  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttgtattgtatcataaagttgtgaaga--atttgacgcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   || ||||||    
T  44552259 gtctgtttggagctcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttgtattgtatcataaagttgtgaagagtgttcgacgcc 44552358  T
Q  205 ataagtgcttcctttcgtgtaacaggctccaaagatactgtatc 248  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  44552359 ataagtgcttcctttcgcgtaacaggctccaaagacaccgtatc 44552402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 3863773 - 3863610
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactgnnnnnnnta-tattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaa 106  Q
    ||||| ||||||||||||||||||||||||||||        | ||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  3863773 aagaaaatcataaattaataattcatagaaactgaaaaaaaaaatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaa 3863674  T
Q  107 gtctgtttggagctcatctctaacttttcttattgcatccaatagctcaggtgttgtatttttg 170  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3863673 gtctgtttgaaactcatctctaacttttcttattgcatccaatagctgaggtgttgtatttttg 3863610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 27644403 - 27644505
Alignment:
Q  16 atcataaattaataattcatagaaactgnnnnnnnta-tattacactat--tgaaatatgattcaatagttgtctgttttcctttaaagttcaagtctgt 112  Q
    ||||||||||||||||||||||||||||        | ||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27644403 atcataaattaataattcatagaaactgaaaaaaaaaatattacactttgttgaaatatgattcaatagttgtttgttttcctttaaagttcaagtctgt 27644502  T
Q  113 ttg 115  Q
    |||    
T  27644503 ttg 27644505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 28392799 - 28392838
Alignment:
Q  60 ctattgaaatatgattcaatagttgtctgttttcctttaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28392799 ctattgaaatatgattcaatagttgtctgttttcctttaa 28392838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 20395049 - 20395016
Alignment:
Q  10 aagaatatcataaattaataattcatagaaactg 43  Q
    ||||| ||||||||||||||||||||||||||||    
T  20395049 aagaaaatcataaattaataattcatagaaactg 20395016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 49529822 - 49529790
Alignment:
Q  10 aagaatatcataaattaataattcatagaaact 42  Q
    ||||| |||||||||||||||||||||||||||    
T  49529822 aagaaaatcataaattaataattcatagaaact 49529790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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