View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19780_high_1 (Length: 668)

Name: NF19780_high_1
Description: NF19780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19780_high_1
NF19780_high_1
[»] chr5 (1 HSPs)
chr5 (5-649)||(362419-363063)


Alignment Details
Target: chr5 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 5 - 649
Target Start/End: Complemental strand, 363063 - 362419
Alignment:
Q  5 atagggagtggtgttgttgttatgcaaaggaggcaaaggcagcggattgcgggatataaatataatagaaataaaatgagctatcagactgaggtgagaa 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  363063 atagggagtggtggtgttgttatgcaaaggaggcaaaggcagcggattgcggggtataaatataatagaaataaaatgagctatcagactgaggtgagaa 362964  T
Q  105 agatggggagaattgatgaggataaaccttgttactttgaggaagatgaaagtgatcattccatttccaaggccagtttagtgtatctgtatccaagaag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  362963 agatggggagaattgatgaggataaaccttgttactttgaggaagatgaaagtgatcattccatttccaaggccagtttagtgtatctgtatccaagaag 362864  T
Q  205 tagcaggaccagtactgttgtgaagaaccaaacgcagtgatggaatatatgacatgaaatcatgtactcttactagcctctggaagaagaaccaattttc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  362863 tagcaggaccagtactgttgtgaagaaccaaacgcagtgatggaatatatgacatgaaatcatgtactcttactagcctctagaagaagaaccaattttc 362764  T
Q  305 tagatattatatggttcaactttttccataaactcaccatgtagttttggagtgtacttaattttcattttcaatcactaataattttgttcactaatag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  362763 tagatattatatggttcaactttttccataaactcaccatgtagttttggagtgtacttaattttcattttcaatcactaataattttgttcactaatag 362664  T
Q  405 ttttggatgagtttgtgtatgttataatggcatcatcattaaattataatgatctactcgctttaagtttgttattttttcaaattttgaagtgctttca 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  362663 ttttggatgagtttgtgtatgttataatggcatcatcattaaattataatgatctactcgcttgaagtttgttattttttcaaattttgaagtgctttca 362564  T
Q  505 actaatacaagacacctaagaacacttgaatgatgagatgattattcgtatatcttgaacatgggtgtccttgatgaaaagtagaactagttgagaaaga 604  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  362563 actaatacaagacacctaagaacgcttgaatgatgagatgattattcgtatatcttgaacatgggtgtccttgatgaaaagtagaactagttgagaaaga 362464  T
Q  605 tcatctacaactaaaataatgtccttatatcttgaacattatgct 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  362463 tcatctacaactaaaataatgtccttatatcttgaacattatgct 362419  T

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