View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19780_high_3 (Length: 206)
Name: NF19780_high_3
Description: NF19780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19780_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 33557838 - 33557661
Alignment:
| Q |
15 |
cataggtggatcaacacttaaaaaatgtttagaatttcaaatatggcacaagtcatttcttaatagtagaggttagcgatcctcttaatttttacaattg |
114 |
Q |
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| T |
33557838 |
cataggtggatcaacacttaaaaaatgtttaaaatttcaaatatggcacaagtcatttcttaatagtagaggttagcgatcctcttaatttttacaattg |
33557739 |
T |
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| Q |
115 |
agataataacttaattgatatt----aattcaatataaacaacaacaaataagtatgtaactcgtattaaaccgacat |
188 |
Q |
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| T |
33557738 |
agataataacttaattgatattaattaattcaataaaaacaacaacaaataaatatgtaactcgtattaaaccgacat |
33557661 |
T |
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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 476707 - 476774
Alignment:
| Q |
74 |
ttaatagtagaggttagcgatcctcttaatttttacaattgagataataacttaattgatattaattc |
141 |
Q |
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| T |
476707 |
ttaatagtggaggttaatgatccttgtcatttttacaattgagataatgactcaattgatatcaattc |
476774 |
T |
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