View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19780_low_2 (Length: 466)
Name: NF19780_low_2
Description: NF19780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19780_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 451
Target Start/End: Original strand, 53298208 - 53298631
Alignment:
| Q |
13 |
aatatcatctaggctatttaagcaataaggaatgagagcataatctcccatttaggttatggaggtcttgtacacaagttaatcaaatttaaacatattt |
112 |
Q |
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|||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53298208 |
aatatcatttaggctatttaagcaataaggaat--------aatctctcatttaggttatggaggtcttgtacacaagttaatcaaatttaaacatactt |
53298299 |
T |
|
| Q |
113 |
tggctatctaatcgataaaggatgagaggatagtctcgaattcggtcatggaggataaatctcatgaaccatttctaaagtctttaaggtcctaatttta |
212 |
Q |
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| T |
53298300 |
tggctatctaatcgataaaggatgagaggatagtctcgaattcggtcatggaggataaatctcatgaaccatttctaaagtcattaaggtcctaatttta |
53298399 |
T |
|
| Q |
213 |
accatattttgggggannnnnnnnncttttctttccccttgtttattcccttttaaataggctttgagttgtaaatgggttgagtacctcacgtaatctt |
312 |
Q |
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|||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53298400 |
accatattttggggga-----------ttttttttcccttgtttattccgttttaaataggctttgagttgtaaatgggttgagtacctcacgtaatctt |
53298488 |
T |
|
| Q |
313 |
atttctaattgaaatatctttgcagtgataaaaattaataaatcaaataaatattcattagt----acccaccatttgaaaaacatgagatttgtgaact |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
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| T |
53298489 |
atttctaattgaaatatctttgcagtgataaaaattaataaatcaaataaatattcattagtacccacccaccatttgaaaaacatgagatttttttact |
53298588 |
T |
|
| Q |
409 |
tttatttaaagcttgttgttgggtgtgcattttaggtcaatgt |
451 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53298589 |
tttatttaaagcttgttgtggggtgtgcattttaggtcaatgt |
53298631 |
T |
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