View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19780_low_3 (Length: 456)
Name: NF19780_low_3
Description: NF19780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19780_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 22 - 446
Target Start/End: Original strand, 31759102 - 31759526
Alignment:
| Q |
22 |
acgagaatctgaggaaacgtgacatatataaatttctaagttgtctgatttatttatctacaagccaattatttatctccttgacacctttccaactcta |
121 |
Q |
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| T |
31759102 |
acgagaatctgaggaaacgtgacatatataaatttctaagttgtctgatttatttatctacaagccaattatttatctccttgacacctttccaactcta |
31759201 |
T |
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| Q |
122 |
acccataatcttgcagtcccaccaccactagtacatatttatttcaacaaatgggaaattgagcttctctccattatcctctttggtcggccaaaacact |
221 |
Q |
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| T |
31759202 |
acccataatcttgcagtcccaccaccactagtacatatttatttcaacaaatgggaaattgagcttctctccattatcctctttggtcggccaaaacact |
31759301 |
T |
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| Q |
222 |
taagctgtggtgcatgaagttcaaaattatgtgggtttgacaatttgtattggaagtcatgtcctaacagcttgttttttctttgttacttatgctacac |
321 |
Q |
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| T |
31759302 |
taagctgtggtgcatgaagttcaaaattatgtgggtttgacaatttgtattggaagtcatgtcctaacagcttgttttttctttgttacttatgctacac |
31759401 |
T |
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| Q |
322 |
taagatgctaatatatacatcataagtagcatagcatgtatggcattgtttccttctgccatggcaagcaatatgcacaatgacacgaacacttcaatct |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31759402 |
taagatgctaatatatacatcataagtagcatagcatgtatggcattgtttccttctgccatggcaagcaatatgcacaatgacacgaacacttcaatct |
31759501 |
T |
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| Q |
422 |
tgtttcttcaaatacgttacctttg |
446 |
Q |
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| T |
31759502 |
tgtttcttcaaatacgttacctttg |
31759526 |
T |
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