View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19781_high_2 (Length: 496)

Name: NF19781_high_2
Description: NF19781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19781_high_2
NF19781_high_2
[»] chr8 (5 HSPs)
chr8 (1-477)||(10734090-10734566)
chr8 (373-477)||(10739126-10739230)
chr8 (358-469)||(15007175-15007285)
chr8 (373-457)||(17909932-17910016)
chr8 (373-457)||(36911894-36911978)
[»] chr4 (7 HSPs)
chr4 (358-466)||(54687610-54687718)
chr4 (373-465)||(26997330-26997422)
chr4 (362-465)||(26992133-26992239)
chr4 (373-468)||(54678505-54678600)
chr4 (358-456)||(22746677-22746774)
chr4 (359-468)||(52311164-52311273)
chr4 (358-405)||(2928757-2928804)
[»] chr7 (4 HSPs)
chr7 (375-457)||(33190270-33190352)
chr7 (368-452)||(39865567-39865651)
chr7 (375-468)||(26617712-26617802)
chr7 (42-85)||(38569117-38569160)
[»] chr3 (4 HSPs)
chr3 (358-457)||(44126661-44126760)
chr3 (380-452)||(8832505-8832577)
chr3 (351-405)||(7873775-7873829)
chr3 (358-469)||(13921697-13921807)
[»] chr5 (5 HSPs)
chr5 (358-452)||(19783153-19783247)
chr5 (380-452)||(19779927-19779999)
chr5 (356-405)||(25214337-25214386)
chr5 (356-405)||(25278487-25278536)
chr5 (358-402)||(16633194-16633238)
[»] chr1 (5 HSPs)
chr1 (358-447)||(29530252-29530341)
chr1 (361-405)||(26023634-26023678)
chr1 (410-455)||(40279152-40279197)
chr1 (418-457)||(40274371-40274410)
chr1 (435-477)||(26023537-26023579)
[»] chr6 (4 HSPs)
chr6 (372-469)||(23599899-23599997)
chr6 (32-78)||(14329539-14329585)
chr6 (32-78)||(14422549-14422595)
chr6 (32-85)||(14445402-14445455)


Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 10734566 - 10734090
Alignment:
Q  1 gttgattggaacggcaattatgtgtggtatgattaggcatcaaattatctccaaacaataatcaacatataaatataagcatcaacagtaaatgttaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  10734566 gttgattggaacggcaattatgtgtggtatgattaggcatcaaattatctccaaacaataatcagcatataaatataagcatcagcagtaaatgttaata 10734467  T
Q  101 agcataaacgtagtcacacaagcctataaactaaaaggcattagaatgatagtcatggtatctattacgaaagaataaatcgaaacacacattgatcttt 200  Q
    || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10734466 aggataaacgtagtcacacaagcctataaactaaaaagcattagaatgatagtcatggtatctattacgaaagaataaatcgaaacacacattgatcttt 10734367  T
Q  201 aaaaacttcaaaaacgtgtacctttagaattgacacactgattgctgcatgtgtgttgaacctcataaacccaacatccaaaattcatgctctttttatg 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||| ||||||||||    
T  10734366 aaaaacttcaaaaacgtgtgcctttagaattgacacactgattgttgcatgtgtgttgaacctcataaacccataatccaaaattcatgttctttttatg 10734267  T
Q  301 ctactcttttgcacaatcttgtatgctctgaaattttgaatctcagttggtcagcgtttcgtgctgataacgtgttaagaaataaagtaaatgcacaaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10734266 ctactcttttgcacaatcttgtatgctctgaaattttgaatctcagttggtcagcgtttcgtgctgataacgtgttaagaaataaagtaaatgcacaaga 10734167  T
Q  401 tcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagtatatctttacatgacaatgt 477  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10734166 tcaaacaaaaagagaatgaagaagatgaaaacactttgtattattctcttcacaagtatatctttacatgacaatgt 10734090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 373 - 477
Target Start/End: Complemental strand, 10739230 - 10739126
Alignment:
Q  373 tgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagtatatctttacatgac 472  Q
    ||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  10739230 tgttaagaaataaagtaaaagcacaagatcaaagaagaagagaatggagaagatgaaagcactttgtattattctcttcacaagtatatctttacatggc 10739131  T
Q  473 aatgt 477  Q
    |||||    
T  10739130 aatgt 10739126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 469
Target Start/End: Complemental strand, 15007285 - 15007175
Alignment:
Q  358 ttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagt 457  Q
    |||||||||| ||||||||| ||||||||||||| ||||| ||||||| || | ||| | ||||||||||||| |||||||||||| ||||||||| |||    
T  15007285 ttcgtgctgagaacgtgttatgaaataaagtaaaagcacaggatcaaagaagatgaggaaggagaagatgaaagcactttgtatta-tctcttcaccagt 15007187  T
Q  458 atatctttacat 469  Q
     | |||||||||    
T  15007186 gtgtctttacat 15007175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 457
Target Start/End: Complemental strand, 17910016 - 17909932
Alignment:
Q  373 tgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagt 457  Q
    |||||| |||||||||||| ||||||||||||| || | ||| | |||||||||||||  ||||||||||||||||||| |||||    
T  17910016 tgttaaaaaataaagtaaaagcacaagatcaaaaaagatgaggaaggagaagatgaaagtactttgtattattctcttctcaagt 17909932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 457
Target Start/End: Original strand, 36911894 - 36911978
Alignment:
Q  373 tgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagt 457  Q
    ||||| |||||||| |||| ||||||||||||| || ||||| | | ||||| |||||||||||| |||||||||||||| ||||    
T  36911894 tgttatgaaataaactaaaagcacaagatcaaagaagaagaggaagaagaaggtgaaaacactttttattattctcttcagaagt 36911978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 358 - 466
Target Start/End: Original strand, 54687610 - 54687718
Alignment:
Q  358 ttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagt 457  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||| || ||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  54687610 ttcgtgctgataacgtgttaagaaataaagtaaaagcacaaaatcaaagaagaagaggaaggagaagatgaaatcactttgtattattctcttcacaagt 54687709  T
Q  458 atatcttta 466  Q
     ||||||||    
T  54687710 gtatcttta 54687718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 373 - 465
Target Start/End: Complemental strand, 26997422 - 26997330
Alignment:
Q  373 tgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagtatatcttt 465  Q
    ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  26997422 tgttaagaaataaagtaaatgcacaagatcaaagaagaagagaaaggagaagatgaaagcactttgtattattctcttcacaagtatgtcttt 26997330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 362 - 465
Target Start/End: Complemental strand, 26992239 - 26992133
Alignment:
Q  362 tgctgataacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtat---tattctcttcacaagta 458  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| |  ||||||||||||  |||||||||   |||||||||||||||||    
T  26992239 tgctgataacgtgttaagaaataaagtaaatgcacaagatcaaagaagaagaggaaagagaagatgaaagtactttgtattattattctcttcacaagta 26992140  T
Q  459 tatcttt 465  Q
    |||||||    
T  26992139 tatcttt 26992133  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 373 - 468
Target Start/End: Original strand, 54678505 - 54678600
Alignment:
Q  373 tgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagtatatctttaca 468  Q
    ||||||||||||||| |||  |||||||||||| || ||||| | |||||||||||||||||||| |||||||||||||||||   ||||||||||    
T  54678505 tgttaagaaataaaggaaaaacacaagatcaaagaagaagaggaaggagaagatgaaaacactttttattattctcttcacaaacgtatctttaca 54678600  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 456
Target Start/End: Complemental strand, 22746774 - 22746677
Alignment:
Q  358 ttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaag 456  Q
    ||||| |||||||||||||||||||||||  |||  || ||||||||| || | ||| | | |||||||||||  ||||||||||||||||||||||||    
T  22746774 ttcgtactgataacgtgttaagaaataaacaaaaa-cataagatcaaagaagacgaggaggaagaagatgaaagtactttgtattattctcttcacaag 22746677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 468
Target Start/End: Original strand, 52311164 - 52311273
Alignment:
Q  359 tcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagta 458  Q
    ||||||| |||||||||||  ||||||| ||||  |||||||||||| ||  |||  | | ||| |||||||||| ||||||||||||||||||||| |     
T  52311164 tcgtgcttataacgtgttataaaataaactaaaaacacaagatcaaagaagtagaagaagaagatgatgaaaacattttgtattattctcttcacaaatg 52311263  T
Q  459 tatctttaca 468  Q
    | ||||||||    
T  52311264 tgtctttaca 52311273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 405
Target Start/End: Original strand, 2928757 - 2928804
Alignment:
Q  358 ttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaa 405  Q
    |||||| ||||||||||||| |||||||| |||| |||||||||||||    
T  2928757 ttcgtgttgataacgtgttatgaaataaaataaaagcacaagatcaaa 2928804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 375 - 457
Target Start/End: Original strand, 33190270 - 33190352
Alignment:
Q  375 ttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagt 457  Q
    ||||||||||||||||| ||||||||||||| || ||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  33190270 ttaagaaataaagtaaaagcacaagatcaaagaagaagaggaaggagaagatgaaagcactttgtattattctcttcacaagt 33190352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 368 - 452
Target Start/End: Complemental strand, 39865651 - 39865567
Alignment:
Q  368 taacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttca 452  Q
    ||||||||||  |||||||||||| ||||||||||||| || ||||| | ||||||||||||| |||||||||||||||||||||    
T  39865651 taacgtgttataaaataaagtaaaagcacaagatcaaagaagaagaggaaggagaagatgaaagcactttgtattattctcttca 39865567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 375 - 468
Target Start/End: Original strand, 26617712 - 26617802
Alignment:
Q  375 ttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagtatatctttaca 468  Q
    |||||||||||| |||| ||||||||||||| ||   ||| | | |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  26617712 ttaagaaataaactaaaagcacaagatcaaagaa---gaggaagaagaagatgaaaacactttgtattattctcttcacaagtgtgtctttaca 26617802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 38569117 - 38569160
Alignment:
Q  42 aaattatctccaaacaataatcaacatataaatataagcatcaa 85  Q
    |||||||||||||| ||||||||||||||||||| |||||||||    
T  38569117 aaattatctccaaataataatcaacatataaataaaagcatcaa 38569160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 358 - 457
Target Start/End: Original strand, 44126661 - 44126760
Alignment:
Q  358 ttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagt 457  Q
    |||||| ||||||| |||||||||||||| |||| ||| ||||||||| || ||||||| | |||||||||||  |||||||||||||||||||||||||    
T  44126661 ttcgtgttgataacatgttaagaaataaattaaaagcataagatcaaataagaagagaaagaagaagatgaaagtactttgtattattctcttcacaagt 44126760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 452
Target Start/End: Original strand, 8832505 - 8832577
Alignment:
Q  380 aaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttca 452  Q
    |||||||||||| ||||  |||||||  | ||||| | ||||| ||||||| |||||||||||||||||||||    
T  8832505 aaataaagtaaaagcacgggatcaaaggagaagaggaaggagaggatgaaatcactttgtattattctcttca 8832577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 7873775 - 7873829
Alignment:
Q  351 tcagcgtttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaa 405  Q
    |||||| |||||| ||||||||||||| |||||||| |||| | |||||||||||    
T  7873775 tcagcgcttcgtgatgataacgtgttatgaaataaactaaaagtacaagatcaaa 7873829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 469
Target Start/End: Complemental strand, 13921807 - 13921697
Alignment:
Q  358 ttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagt 457  Q
    ||||||||||||||||||||  |||||||   || | ||||||||||| || ||||| | | ||| |||||||   |||||| |||||||||||||||||    
T  13921807 ttcgtgctgataacgtgttataaaataaacataaagaacaagatcaaagaagaagaggaagaagatgatgaaa--gctttgtgttattctcttcacaagt 13921710  T
Q  458 atat-ctttacat 469  Q
     ||| ||||||||    
T  13921709 gtatactttacat 13921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 358 - 452
Target Start/End: Original strand, 19783153 - 19783247
Alignment:
Q  358 ttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttca 452  Q
    |||||||| |||||||||||  |||||||||||| ||| ||||||||| || ||||||| ||||||||| ||| |||||||||||||||||||||    
T  19783153 ttcgtgctaataacgtgttataaaataaagtaaaagcataagatcaaaaaagaagagaaaggagaagataaaagcactttgtattattctcttca 19783247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 452
Target Start/End: Original strand, 19779927 - 19779999
Alignment:
Q  380 aaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttca 452  Q
    |||||||||||| ||||||||||||| || ||||| |  |||||||| ||| |||||||||||||||||||||    
T  19779927 aaataaagtaaaagcacaagatcaaagaagaagaggaatgagaagataaaagcactttgtattattctcttca 19779999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 25214337 - 25214386
Alignment:
Q  356 gtttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaa 405  Q
    |||||||||||||||||||||| |||||||| |||| |||| ||||||||    
T  25214337 gtttcgtgctgataacgtgttatgaaataaactaaaagcactagatcaaa 25214386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 25278487 - 25278536
Alignment:
Q  356 gtttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaa 405  Q
    |||||||||||||||||||||| |||||||| |||| |||| ||||||||    
T  25278487 gtttcgtgctgataacgtgttatgaaataaactaaaagcactagatcaaa 25278536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 16633194 - 16633238
Alignment:
Q  358 ttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatc 402  Q
    ||||||||||||||||||||  ||||||| |||| ||||||||||    
T  16633194 ttcgtgctgataacgtgttataaaataaactaaaagcacaagatc 16633238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 447
Target Start/End: Complemental strand, 29530341 - 29530252
Alignment:
Q  358 ttcgtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattct 447  Q
    |||||||||||||| ||| | |||||||| |||| ||||||||||||| || ||||| | | || |||||||||||||||||||||||||    
T  29530341 ttcgtgctgataacatgtaatgaaataaactaaaagcacaagatcaaagaagaagaggaagaaggagatgaaaacactttgtattattct 29530252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 26023678 - 26023634
Alignment:
Q  361 gtgctgataacgtgttaagaaataaagtaaatgcacaagatcaaa 405  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  26023678 gtgctgataacgtgttaagaaataaagtaaaagcacaagatcaaa 26023634  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 455
Target Start/End: Original strand, 40279152 - 40279197
Alignment:
Q  410 aagagaatggagaagatgaaaacactttgtattattctcttcacaa 455  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||    
T  40279152 aagagaaaggagaagatgaaaacactttatattattctcttcacaa 40279197  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 40274371 - 40274410
Alignment:
Q  418 ggagaagatgaaaacactttgtattattctcttcacaagt 457  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  40274371 ggagaagatgaaagcactttgtattattctcttcacaagt 40274410  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 26023579 - 26023537
Alignment:
Q  435 tttgtattattctcttcacaagtatatctttacatgacaatgt 477  Q
    ||||||||||||||||| || |||| |||||||||||||||||    
T  26023579 tttgtattattctcttctcatgtatgtctttacatgacaatgt 26023537  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 469
Target Start/End: Original strand, 23599899 - 23599997
Alignment:
Q  372 gtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatggagaagatgaaaacactttgtattattctcttcacaagtatat-ctttacat 469  Q
    ||||||||||||||| |||| ||||||||||||| || ||||  | | ||||||||||| || |||||||||||||||||| |||| ||| ||||||||    
T  23599899 gtgttaagaaataaactaaaagcacaagatcaaagaagaagatgaagaagaagatgaaagcattttgtattattctcttcataagtgtatactttacat 23599997  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 14329585 - 14329539
Alignment:
Q  32 attaggcatcaaattatctccaaacaataatcaacatataaatataa 78  Q
    |||||||||  |||||||| |||| ||||||||||||||||||||||    
T  14329585 attaggcatacaattatcttcaaataataatcaacatataaatataa 14329539  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 14422595 - 14422549
Alignment:
Q  32 attaggcatcaaattatctccaaacaataatcaacatataaatataa 78  Q
    |||||||||  |||||||| |||| ||||||||||||||||||||||    
T  14422595 attaggcatacaattatcttcaaataataatcaacatataaatataa 14422549  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 14445402 - 14445455
Alignment:
Q  32 attaggcatcaaattatctccaaacaataatcaacatataaatataagcatcaa 85  Q
    ||||| ||| ||||||| |||||| |||| ||||||||||||||||| ||||||    
T  14445402 attagacataaaattatttccaaataatagtcaacatataaatataaccatcaa 14445455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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