View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19781_high_3 (Length: 456)
Name: NF19781_high_3
Description: NF19781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19781_high_3 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 38153711 - 38153999
Alignment:
| Q |
1 |
tcagaattacgtgtgatgatgaagaagaaagaggcagtcgcagagtttacagagggtgcactcattctgcagcatgcaaaggttgcacttcttgtgtgtg |
100 |
Q |
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| T |
38153711 |
tcagaattacgtgtgatgatgaagaagaaagaggcagtcgcagagtttacagagggtgcactcattctgcagcatgcaaaggttgcacttcttgtgtgtg |
38153810 |
T |
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| Q |
101 |
ctttggatgcgagttatgccgtttttcagattgcacttgccagacttgtactgactttacaaggaatgccaaggcttgagttcatatcatcatattccta |
200 |
Q |
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| T |
38153811 |
ctttggatgcgagttatgccgtttttcagattgcacttgccagacttgtactgactttacaaggaatgccaaggcttgagttcatatcatcatattccta |
38153910 |
T |
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| Q |
201 |
aatcctgatatttttagtacctttttgttcgtatggactgatttgccagtcctaatcaagtgtttaagattctaatgtactggataatt |
289 |
Q |
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| T |
38153911 |
aatcttgatatttttagtacctttttgttcgtatggactgatttgccagtcctaatcaagtgtttaagattctaatgtaatggataatt |
38153999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 284 - 441
Target Start/End: Original strand, 38168423 - 38168580
Alignment:
| Q |
284 |
ataattaattgagttcaatcaaatgattagctccatatatttcttttccgtgttttgttaacattgcttcttcctgattacaagatattgtattcttaga |
383 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
38168423 |
ataattaattgatttcaatcaaatgattagctccatatatttcttttccgtgttttcttaacattgcttcttcctaattacaagatattgtattctcaga |
38168522 |
T |
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| Q |
384 |
actaagtaagatgattcaacaaaaggttgtagtttggtggatatgattctattttgtt |
441 |
Q |
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| T |
38168523 |
actaagtaagatgattcaacaaaaggttgtagtttggtggatatgattctattttgtt |
38168580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 38169591 - 38169730
Alignment:
| Q |
14 |
tgatgatgaagaagaaagaggcagtcgcagagtttacagagggtgcactcattctgcag-catgcaaaggttgcacttcttgtgtgtgctttggatgcga |
112 |
Q |
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|||| |||||||||||||||| ||| |||||||||||||||| |||||||| || ||| |||||||||||||||||||||| |||||| | || || |
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| T |
38169591 |
tgattatgaagaagaaagaggtagttgcagagtttacagaggatgcactcagact-cagtcatgcaaaggttgcacttcttgggtgtgc--tcattgtga |
38169687 |
T |
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| Q |
113 |
gttatgccgtttttcagattgcacttgccagacttgtactgac |
155 |
Q |
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| T |
38169688 |
cttatgccgcttttcggattgcacttgccagacctgtactgac |
38169730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 25922 - 26067
Alignment:
| Q |
15 |
gatgatgaagaagaaagaggcagtcgcagagtttacagagggtgcactcattctgcagcatgcaaaggttgcacttcttgtgtgtgctttggatgcgagt |
114 |
Q |
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|||||||||||||| |||| ||||| |||||||||||||| ||| | || || | ||||||||||||||||| |||||||||||||| || || |
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| T |
25922 |
gatgatgaagaagagcgaggaagtcgaagagtttacagaggatgcggccgatcaccaacgtgcaaaggttgcacttcatgtgtgtgctttgggtgtgaca |
26021 |
T |
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| Q |
115 |
tatgccgtttttcagattgcacttgccagacttgtactgactttac |
160 |
Q |
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| T |
26022 |
tctgccgtttttcagattgcgactgccagacttgtactgactttac |
26067 |
T |
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