View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19781_high_5 (Length: 298)
Name: NF19781_high_5
Description: NF19781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19781_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 40511558 - 40511827
Alignment:
| Q |
18 |
aattcagctttttcctgctaacgaatcgggaatgatctcgccatctgagagtagtggatggatgaatttctcgtccgatcatcacggtggagtaccggag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40511558 |
aattcagctttttcctgctaacgaatcgggaatgatctcgccatctgagagtagtggatggatgaatttctcgtccgatcatcacggtggagtaccggag |
40511657 |
T |
|
| Q |
118 |
cagactgctgttgttgctccacgacctcagcaggtgaagaagagtcgtcgtggaccgaggtcacgaagctcgcagtatcgtggtgttactttctaccgga |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40511658 |
cagactgctgttgttgcttcacgacctcagcaggtgaagaagagtcgtcgtggaccgaggtcacgaagctcgcagtatcgtggtgttactttctaccgga |
40511757 |
T |
|
| Q |
218 |
gaactggacgttgggaatctcatatttggttcgcatttcgcaatcgattattctgtttcttcgtagttca |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40511758 |
gaactggacgttgggaatctcatatttggttcgcatttcgcaatcgattattctgtttcttcgtagttca |
40511827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 6063795 - 6063891
Alignment:
| Q |
152 |
tgaagaagagtcgtcgtggaccgaggtcacgaagctcgcagtatcgtggtgttactttctaccggagaactggacgttgggaatctcatatttggtt |
248 |
Q |
| |
|
|||||||||||||| | ||||| ||||| |||| || |||||| | ||||||||||| ||| | ||||| || || ||||| |||||||| ||||| |
|
|
| T |
6063795 |
tgaagaagagtcgtagaggaccaaggtccagaagttctcagtatagaggtgttactttttacagaagaacaggtcgatgggagtctcatatatggtt |
6063891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University