View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19781_low_1 (Length: 740)
Name: NF19781_low_1
Description: NF19781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19781_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 629; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 18 - 729
Target Start/End: Original strand, 47310822 - 47311547
Alignment:
| Q |
18 |
gtagttagtttgttgattctctagtgactctatatatagaacaatctcatgtacttatttaccctttgaatttttggttaggttttgttttgaattggaa |
117 |
Q |
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| T |
47310822 |
gtagttagtttgttgattctctagtgactctatatacagaacaatctcatgtactcatttaccctttaaatttttggttaggttttgttttgaattggaa |
47310921 |
T |
|
| Q |
118 |
agaattaaacagtgttattttcttaacatttgccttcaagatgagaagatccagagtaaatgccaatattggtgaagctgaagcacttgcatttataatg |
217 |
Q |
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| T |
47310922 |
agaattaaacagtgttattttcttaacatttgccttcaagatgagaagatccagagtaaatgccaatattggtgaagctgaagcacttgcatttataatg |
47311021 |
T |
|
| Q |
218 |
aaagtgaaatatgagtttcaagataagagggaaaagtatgaagaatttttagaacttatgaaagatttcaaggcccaaagaattgatacagaagctgtga |
317 |
Q |
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| T |
47311022 |
aaagtgaaatatgagtttcaagataagagggaaaagtatgaagaatttttagaacttatgaaagatttcaaggcccaaagaattgatacagaagctgtga |
47311121 |
T |
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| Q |
318 |
aagaaggagttatggagttatttaaagaacatcagtatttgatttcaagattcaacatcttcatgccatcaggacatgaaatctcacttccattggatga |
417 |
Q |
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| T |
47311122 |
aagaaagagttatggagttatttaaagaacatcaatatttgatttcaagattcaacatcttcatgccatcaggacatgaaatctcacttccattggatga |
47311221 |
T |
|
| Q |
418 |
tgatcaacaagaaagtgacggattagagttcaaa---------------gatgaactttaaggtgatggagtggcactcaaagatgagcagaaaaatgat |
502 |
Q |
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| T |
47311222 |
tgatcaacaagaaagtgatggattagagttcaaagatgaacataatgatgatgaacttcaaggtgatggagtggcactcaaagatgagcagaaaaatgat |
47311321 |
T |
|
| Q |
503 |
gaagaataacaggttctttggtgtttttgctctttccttgaattgttgtatgaaatgaatttcatgatgagtactatgcaagttacatcacatgttaaca |
602 |
Q |
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| T |
47311322 |
gaagaataacaggttctttggtgtttttgctctttccttgaattgttgtatgaaatgaatttcatgatgagtactatgcaagttacatcacatg-taaca |
47311420 |
T |
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| Q |
603 |
tttccatttcttgtgtcaatttagctgtaaattttttccattgtacgtatacttagaagagtgccatttctttcaactagtagtgtctatacagcaagta |
702 |
Q |
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| T |
47311421 |
tttccatctcttgtgtcaatttagctgcaaattttttccattgtacgtatacttagaagagtgccatttctttcaactagtagtgtctacacagcaagta |
47311520 |
T |
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| Q |
703 |
catagaattgtatcaattgatattcat |
729 |
Q |
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| T |
47311521 |
catagaattgtatcaattgatattcat |
47311547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 105 - 458
Target Start/End: Original strand, 47306840 - 47307187
Alignment:
| Q |
105 |
ttttgaattggaaagaattaaacagtgttattttcttaacatttgccttcaagatgagaagatccagagtaaatgccaatattggtgaagctgaagcact |
204 |
Q |
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| T |
47306840 |
ttttgaattggaacagattaaacagagttatttatttaacatttcccttgaagatgaggagacacagagtagatgccaagattggtgaagcag------t |
47306933 |
T |
|
| Q |
205 |
tgcatttataatgaaagtgaaatatgagtttcaagataagagggaaaagtatgaagaatttttagaacttatgaaagatttcaaggcccaaagaattgat |
304 |
Q |
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| ||| | ||| |||| ||| ||| ||||||| ||| |||||| |||||||| |||||||| || || | | |||||| |||| ||||||||||| |
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| T |
47306934 |
gtcgtttgttatggaagtaaaacatgtgtttcaaaataggagggagaagtatgatgaatttttgaaaattctagatgatttctcggccgaaagaattgat |
47307033 |
T |
|
| Q |
305 |
acagaagctgtgaaagaaggagttatggagttatttaaagaacatcagtatttgatttcaagattcaacatcttcatgccatcaggacatgaaatctcac |
404 |
Q |
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| T |
47307034 |
cgagcagctgtgaaagaaggaatgacggagttgttaaaagatcataaaggtttaatttcaagattcaacatcttcttgccaccaggacaagaaatctcac |
47307133 |
T |
|
| Q |
405 |
ttccattggatgatgatcaacaagaaagtgacggattagagttcaaagatgaac |
458 |
Q |
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||||||||||||||||| ||||| | |||| ||||||| ||| ||||||||| |
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| T |
47307134 |
ttccattggatgatgatgaacaacgaggtgatggattagcattcgaagatgaac |
47307187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 232 - 421
Target Start/End: Original strand, 47316119 - 47316308
Alignment:
| Q |
232 |
gtttcaagataagagggaaaagtatgaagaatttttagaacttatgaaagatttcaaggcccaaagaattgatacagaagctgtgaaagaaggagttatg |
331 |
Q |
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|||||||||||||||||||| |||||||||||| | |||| | |||||||| ||| |||||||||||| | || || ||||||||||||| | |
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| T |
47316119 |
gtttcaagataagagggaaatgtatgaagaattcgtgaaactcctacaagatttcggcgccaaaagaattgatagaagagtcgtcaaagaaggagttacg |
47316218 |
T |
|
| Q |
332 |
gagttatttaaagaacatcagtatttgatttcaagattcaacatcttcatgccatcaggacatgaaatctcacttccattggatgatgat |
421 |
Q |
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| T |
47316219 |
gagttgttgaaagaacatcaagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgat |
47316308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 294 - 426
Target Start/End: Original strand, 47314442 - 47314574
Alignment:
| Q |
294 |
aaagaattgatacagaagctgtgaaagaaggagttatggagttatttaaagaacatcagtatttgatttcaagattcaacatcttcatgccatcaggaca |
393 |
Q |
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| T |
47314442 |
aaagaattgataaaagagttgtcaaagaaggagttatggagttgtttaaagagcatcaagatttaatttcaagattcagcatcttcttgcaaccaggaca |
47314541 |
T |
|
| Q |
394 |
tgaaatctcacttccattggatgatgatcaaca |
426 |
Q |
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|||||| ||| ||||||||||| |||||||||| |
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| T |
47314542 |
tgaaatttcatttccattggataatgatcaaca |
47314574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 317 - 407
Target Start/End: Original strand, 47319714 - 47319804
Alignment:
| Q |
317 |
aaagaaggagttatggagttatttaaagaacatcagtatttgatttcaagattcaacatcttcatgccatcaggacatgaaatctcacttc |
407 |
Q |
| |
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||||||||| |||||||||| || ||||||||||| |||| ||||||||||||||||||||| ||||| ||||| |||||||| |||||| |
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| T |
47319714 |
aaagaaggaattatggagttgttgaaagaacatcaagatttaatttcaagattcaacatcttcttgccaccaggagatgaaatcccacttc |
47319804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 729
Target Start/End: Original strand, 47320474 - 47320522
Alignment:
| Q |
681 |
agtagtgtctatacagcaagtacatagaattgtatcaattgatattcat |
729 |
Q |
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| T |
47320474 |
agtagtgtgtatacaacaagtacgtagaattgtatcaattgatattcat |
47320522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 47881628 - 47881566
Alignment:
| Q |
229 |
tgagtttcaagataagagggaaaagtatgaagaatttttagaacttatgaaagatttcaaggc |
291 |
Q |
| |
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||||||||||||| ||| |||||||||||| ||||||||| | |||||||||| |||||||| |
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| T |
47881628 |
tgagtttcaagatgagatggaaaagtatgatgaatttttaaatgttatgaaagaattcaaggc |
47881566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 47316669 - 47316715
Alignment:
| Q |
511 |
acaggttctttggtgtttttgctctttccttgaattgttgtatgaaa |
557 |
Q |
| |
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| T |
47316669 |
acaggttctttggtcctttttctcttttcttgaattgttgtatgaaa |
47316715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 47879414 - 47879475
Alignment:
| Q |
230 |
gagtttcaagataagagggaaaagtatgaagaatttttagaacttatgaaagatttcaaggc |
291 |
Q |
| |
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|||||||||||| ||| ||||||||||| ||||||||| | ||||||| ||||||||||| |
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| T |
47879414 |
gagtttcaagatgagatagaaaagtatgatgaatttttaaatgttatgaaggatttcaaggc |
47879475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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