View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19781_low_11 (Length: 230)
Name: NF19781_low_11
Description: NF19781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19781_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 48888536 - 48888425
Alignment:
| Q |
13 |
agcagagacagtaagaacctgtaannnnnnnnacttaatttaaactagaatgtaaatagcagcactgaacatctaaaatagcacaaataaattcataaca |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48888536 |
agcagagacagtaagaacctgtaattttttttacttaatttaaactagaatgtaaatagcagtactgaacatctaaaatagcacaaataaattcataaca |
48888437 |
T |
|
| Q |
113 |
tgttcctcctta |
124 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48888436 |
tgttcctcctta |
48888425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University