View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19781_low_2 (Length: 731)

Name: NF19781_low_2
Description: NF19781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19781_low_2
NF19781_low_2
[»] chr4 (6 HSPs)
chr4 (18-717)||(51673189-51673889)
chr4 (382-448)||(21945479-21945545)
chr4 (405-450)||(5654606-5654651)
chr4 (414-455)||(8457933-8457974)
chr4 (393-450)||(20743293-20743350)
chr4 (405-450)||(31243563-31243608)
[»] chr8 (2 HSPs)
chr8 (414-450)||(40063959-40063995)
chr8 (414-457)||(29198487-29198530)
[»] chr7 (1 HSPs)
chr7 (414-454)||(44172901-44172941)
[»] chr6 (2 HSPs)
chr6 (405-448)||(9195771-9195814)
chr6 (417-454)||(10157995-10158032)
[»] chr3 (1 HSPs)
chr3 (414-469)||(20691327-20691382)
[»] chr1 (1 HSPs)
chr1 (369-448)||(6427313-6427392)


Alignment Details
Target: chr4 (Bit Score: 649; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 18 - 717
Target Start/End: Complemental strand, 51673889 - 51673189
Alignment:
Q  18 agaaggatttggaagaggaattgaagtatcagagagtgtgtttgagtgcaagtgatggtggtgtggtttcgttggattggcctgttgaattggacttgga 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51673889 agaaggatttggaagaggaattgaagtatcagagagtttgtttgagtgcaagtgatggtggtgtggtttcgttggattggcctgttgaattggacttgga 51673790  T
Q  118 agaggaacgtggtttggattctacactactgattgtgcctggtactcctcaagggagtatggatgataatattagggtttttgtgattgatgctcttaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51673789 agaggaacgtggtttggattctacactactgattgtgcctggtactcctcaagggagtatggatgataatattagggtttttgtgattgatgctcttaag 51673690  T
Q  218 agaggctttttccctgttgttatgaatcctagaggatgtgcctcctcacccatcaccactcctaggtattactattacttttcattcgctttctatattt 317  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51673689 agagggtttttccccgttgttatgaatcctagaggatgtgcctcctcacctatcaccactcctaggtattactattacttttcattctctttctatattt 51673590  T
Q  318 ttgaaattatttagctgttattaattttaggatatagtgttcagaaagtagctatgaagcacgaacatggcacatacactggcaagccgacactcctaat 417  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||    
T  51673589 ttgaaattatttagcttttattaattttaggatatagtgttcagaaagtagctatgaagcacgaacacggcacatacactggcaagccgacactgataat 51673490  T
Q  418 aattggagaaaatgacataattcattgtaatcacatgcgttgctgtcagacaatgacacacgtgagatacccgacacgcattcaatcaaaagtgt-ccgt 516  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  51673489 aattggagaaaatgacataattcattgtaatcacatgcgttgttgtcagacaatgacacatgtgagatacccgacacgcattcaatcaaaagtgtcccgt 51673390  T
Q  517 gttacagaacatagtatttgtagtcaattttcctgctgattggtattggtatgctatagtgtatcaatgtgatcatgtatctattcgaaatgctagttct 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51673389 gttacagaacatagtatttgtagtcaattttcctgctgattggtattggtatgctatagtgtatcaatgtgatcatgtatctattcgaaatgctagttct 51673290  T
Q  617 tttgggaatctgtgtagtggaaaacgaagttactgatagtatcttgtttgacactgtatagtaaatttagttcgtagttgtagtttagtagttttggtgt 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51673289 tttgggaatctgtgtagtggaaaacgaagttactgatagtatcttgtttgacactgtatagtaaatttagttcgtagttgtagtttagtagttttggtgt 51673190  T
Q  717 g 717  Q
    |    
T  51673189 g 51673189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 448
Target Start/End: Original strand, 21945479 - 21945545
Alignment:
Q  382 acatggcacatacactggcaagccgacactcctaataattggagaaaatgacataattcattgtaat 448  Q
    ||||| |||| |||||| || ||||||||  ||||||||| || |||||||||||||||| ||||||    
T  21945479 acatgacacagacactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaat 21945545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 5654651 - 5654606
Alignment:
Q  405 cgacactcctaataattggagaaaatgacataattcattgtaatca 450  Q
    |||||||  |||||||| ||||||||||||||||||| ||||||||    
T  5654651 cgacactgataataatttgagaaaatgacataattcaatgtaatca 5654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 8457933 - 8457974
Alignment:
Q  414 taataattggagaaaatgacataattcattgtaatcacatgc 455  Q
    |||||||| ||||||||||||||||| | |||||||||||||    
T  8457933 taataatttgagaaaatgacataattgaatgtaatcacatgc 8457974  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 20743350 - 20743293
Alignment:
Q  393 acactggcaagccgacactcctaataattggagaaaatgacataattcattgtaatca 450  Q
    |||||| || ||||||||   |||||||| ||||||||||||||||||| ||||||||    
T  20743350 acactgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatca 20743293  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 31243608 - 31243563
Alignment:
Q  405 cgacactcctaataattggagaaaatgacataattcattgtaatca 450  Q
    |||||||  |||||||| ||||||||||||||||||| ||||||||    
T  31243608 cgacacttataataatttgagaaaatgacataattcagtgtaatca 31243563  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 450
Target Start/End: Original strand, 40063959 - 40063995
Alignment:
Q  414 taataattggagaaaatgacataattcattgtaatca 450  Q
    |||||||| ||||||||||||||||||||||||||||    
T  40063959 taataatttgagaaaatgacataattcattgtaatca 40063995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 457
Target Start/End: Complemental strand, 29198530 - 29198487
Alignment:
Q  414 taataattggagaaaatgacataattcattgtaatcacatgcgt 457  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaatcatatgcgt 29198487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 44172941 - 44172901
Alignment:
Q  414 taataattggagaaaatgacataattcattgtaatcacatg 454  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  44172941 taataatttgagaaaatgacataattcaatgtaatcacatg 44172901  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 448
Target Start/End: Complemental strand, 9195814 - 9195771
Alignment:
Q  405 cgacactcctaataattggagaaaatgacataattcattgtaat 448  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||    
T  9195814 cgacactcctaataatttgagaaaatgacataatttagtgtaat 9195771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 454
Target Start/End: Original strand, 10157995 - 10158032
Alignment:
Q  417 taattggagaaaatgacataattcattgtaatcacatg 454  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatg 10158032  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 469
Target Start/End: Original strand, 20691327 - 20691382
Alignment:
Q  414 taataattggagaaaatgacataattcattgtaatcacatgcgttgctgtcagaca 469  Q
    |||||||| ||||||||||||||||||| |||||||| ||| || | |||||||||    
T  20691327 taataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagaca 20691382  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 6427313 - 6427392
Alignment:
Q  369 ctatgaagcacgaacatggcacatacactggcaagccgacactcctaataattggagaaaatgacataattcattgtaat 448  Q
    |||||||||||| ||| |||||  |||||| || ||| ||||  ||||||||| |||||||| |||||||||| ||||||    
T  6427313 ctatgaagcacggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaat 6427392  T

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