View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19781_low_4 (Length: 486)
Name: NF19781_low_4
Description: NF19781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19781_low_4 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 411
Target Start/End: Original strand, 54967088 - 54967493
Alignment:
| Q |
5 |
gcataggtgataggagatccctcagcaaaaacagaccaatgagcagaaattagagactcacaactgtcataagtagtccaggatttataaaatttaaatc |
104 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
54967088 |
gcataggtgataggtgttccctcagccaaaacagaccaatgagcagaaattagagattcacaactgtcataagtggtccaggatttataaaatttaaatc |
54967187 |
T |
|
| Q |
105 |
taggaataattacctcaaatcatgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
54967188 |
taggaataattacctcaaatcatgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcactagcggaaacgtgaaataaaagcgta |
54967287 |
T |
|
| Q |
205 |
atgacacagagagaattttagcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctctt-aaaacttccactataatga |
303 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54967288 |
atgacacaaagagaattttagcgtggaaaaccttctcaatatgagaaaggg--aaaaaccacgggacccttgggcctcttaaaaacttccactataatga |
54967385 |
T |
|
| Q |
304 |
taatgagaatacaacaacttcacccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcg |
403 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54967386 |
taatgggaatacaacaacttcacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctca |
54967485 |
T |
|
| Q |
404 |
caagaaaa |
411 |
Q |
| |
|
|||||||| |
|
|
| T |
54967486 |
caagaaaa |
54967493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 126 - 411
Target Start/End: Original strand, 44782523 - 44782807
Alignment:
| Q |
126 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttag |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| || ||| |||||||| |||||||||||| |
|
|
| T |
44782523 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttag |
44782622 |
T |
|
| Q |
226 |
cgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttca |
325 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44782623 |
cgtggaaaaccttctcaatatgagaaagggaaaaaa-ccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttca |
44782721 |
T |
|
| Q |
326 |
cccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44782722 |
cccttaggtggatctcactacaatatatctctcaatttgcaaggaacactctcacaaattggctcactatttctctcacaagaaaa |
44782807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 139 - 411
Target Start/End: Original strand, 54979854 - 54980125
Alignment:
| Q |
139 |
cctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagcgtggaaaacctt |
238 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||||||| || |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
54979854 |
cctgcataatttccctcctccgtcaactcaaaataagcactagcggaaacgtgaaataaaagtgtaatgacacaaagagaattttagcatggaaaacctt |
54979953 |
T |
|
| Q |
239 |
ctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaa-cttccactataatgataatgagaatacaacaacttcacccttaggtgga |
337 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54979954 |
ctcaatatgagaaagggaaaaa--ccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgga |
54980051 |
T |
|
| Q |
338 |
tctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
54980052 |
tctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcgctatttctctcacaagaaaa |
54980125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 127 - 402
Target Start/End: Complemental strand, 39299001 - 39298729
Alignment:
| Q |
127 |
tgttgggaaatgcctgc-ataatttccctcctccgtgaactcaaaatag-gcactatcggaaacgcgaaataaaagcgtcatgacacagagagaatttta |
224 |
Q |
| |
|
|||||||||||| || | |||||||||||||| | |||||| ||||||| ||| || | |||||| |||||| ||| || ||||||| ||| ||||||| |
|
|
| T |
39299001 |
tgttgggaaatgacttccataatttccctccttcatgaacttaaaatagcgcattagcagaaacgtgaaatataagtgtaatgacacgaagataatttta |
39298902 |
T |
|
| Q |
225 |
gcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttc |
324 |
Q |
| |
|
| ||| |||||||||||||||||| |||| ||||| ||||||| |||||||||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
39298901 |
gtgtgaaaaaccttctcaatgtgatgaaggaaaaat---cacgggacccttgtgcctcttaaa-cttccactataatgataaagggaatacaacaacttc |
39298806 |
T |
|
| Q |
325 |
acccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctc |
402 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39298805 |
acccttaggtggatctaactacaatatatctctcaatttgtaagg-acactctcacaaattggctcactatttctctc |
39298729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 127 - 349
Target Start/End: Original strand, 18556305 - 18556523
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||| ||||||||||||||| || | | |||||| |||||| |||||| |||||||| | | |||||||| |
|
|
| T |
18556305 |
tgttgggaaacacctacataatttgcctcctccatgaactcaaaataggtaccagcagaaacgtgaaatataagcgtaatgacacataaa--attttagc |
18556402 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcac |
326 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| ||||| | |||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18556403 |
gtggaaaaccttctcaatctgagaaagg-caaaaaaccacgggaccctcgagcctcttaaa-cttccactataatgacaatgagaatacaacaacttcac |
18556500 |
T |
|
| Q |
327 |
ccttaggtggatctcactacaat |
349 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
18556501 |
ccttaggtggatctcattacaat |
18556523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 127 - 407
Target Start/End: Complemental strand, 17645981 - 17645715
Alignment:
| Q |
127 |
tgttgggaaatg-cctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttag |
225 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||| | ||| || || ||| || || |||| | |||||||| |
|
|
| T |
17645981 |
tgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacactagtaggaacataaattataagtgtaatcacac----aaaattttag |
17645886 |
T |
|
| Q |
226 |
cgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttca |
325 |
Q |
| |
|
||||||||||||||||||| | | ||| |||||| || |||| || |||| |||||||||||||||||||||||| ||||||||| | |
|
|
| T |
17645885 |
cgtggaaaaccttctcaatataaaaaa-----aaaaaccacgggactcttgagcgtctt-aaacttccactataatgataatgacaatacaaca-----a |
17645797 |
T |
|
| Q |
326 |
cccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaag |
407 |
Q |
| |
|
||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
17645796 |
cccctaggtggatctcactacaacgtatctctcaatttgtaaggaacactcttacaaattggctcactatttatctcacaag |
17645715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 317
Target Start/End: Complemental strand, 50603320 - 50603225
Alignment:
| Q |
218 |
aattttagcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||| | ||||||||||| |||||| |||||||| |
|
|
| T |
50603320 |
aattttagcgtggaaaaccttctcaatgtgagtaag---aaaaaaccacggaacccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
50603225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 50603403 - 50603351
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact |
179 |
Q |
| |
|
|||||||||||||| | | |||||| |||||||||||||||||||||| |||| |
|
|
| T |
50603403 |
tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacact |
50603351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 127 - 411
Target Start/End: Complemental strand, 41481815 - 41481532
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| || ||| |||||||| ||||||||||||| |
|
|
| T |
41481815 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttagc |
41481716 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcac |
326 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41481715 |
gtggaaaaccttctcaatatgagaaagggaaaaaa-ccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcac |
41481617 |
T |
|
| Q |
327 |
ccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41481616 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaa |
41481532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 126 - 411
Target Start/End: Complemental strand, 36167814 - 36167531
Alignment:
| Q |
126 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttag |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || ||| |||||||| |||||||||||| |
|
|
| T |
36167814 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttag |
36167715 |
T |
|
| Q |
226 |
cgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttca |
325 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36167714 |
cgtggaaaaccttctcaatatgagaaagggaaaaaa-ccacgga-cccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttca |
36167617 |
T |
|
| Q |
326 |
cccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36167616 |
cccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaa |
36167531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 132 - 398
Target Start/End: Original strand, 18951129 - 18951390
Alignment:
| Q |
132 |
ggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagcgtgga |
231 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||| |||||||| |||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcactagcggaaacatgaaatataagcgtaatgacacaga----attttagcatgga |
18951224 |
T |
|
| Q |
232 |
aaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcaccctta |
331 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18951225 |
aaaccttctcaatgtgagaaagggaaaaaa-ccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcaccctta |
18951323 |
T |
|
| Q |
332 |
ggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttc |
398 |
Q |
| |
|
||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18951324 |
ggttgatctcactataatttatctctcaatttgtaaggaacactctcacaaattggctcattatttc |
18951390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 18116885 - 18116930
Alignment:
| Q |
128 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaata |
173 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||| |||||| |
|
|
| T |
18116885 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaata |
18116930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 124 - 411
Target Start/End: Complemental strand, 2939 - 2653
Alignment:
| Q |
124 |
tcatgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaatttt |
223 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| |||||||| |||||| |||||| |||||||| |||||||||| |
|
|
| T |
2939 |
tcatgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacactagcggaaacgtgaaatataagcgtaatgacacaaagagaatttt |
2840 |
T |
|
| Q |
224 |
agcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaactt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2839 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaa-ccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaactt |
2741 |
T |
|
| Q |
324 |
cacccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2740 |
cacccttaggtggatctcactacaatatatctctcaatttgtaaggaacgctctcacaaattggctcactatttctctcacaagaaaa |
2653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 127 - 411
Target Start/End: Original strand, 4842648 - 4842931
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| || |||||||| ||||||||||||| |
|
|
| T |
4842648 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagtgtaatgacacaaagagaattttagc |
4842747 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcac |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4842748 |
gtggaaaaccttctcaatgtgagaaagggaaaaaa-ccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaacttcac |
4842846 |
T |
|
| Q |
327 |
ccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
4842847 |
ccttaggtggatctcactacaatatatctctcaatttttaaggaacactctcacaaattggctcaatatttctctcacaagaaaa |
4842931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 124 - 411
Target Start/End: Original strand, 25857128 - 25857411
Alignment:
| Q |
124 |
tcatgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaatttt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| |||||| |||||||||||| ||||| |
|
|
| T |
25857128 |
tcatgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcactagcggaaacgtgaaatataagcgtaatgacacagaga--atttt |
25857225 |
T |
|
| Q |
224 |
agcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaactt |
323 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25857226 |
agcgtggaaaaccttctcaatgtgagaaaaggaaaaa--ccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaactt |
25857323 |
T |
|
| Q |
324 |
cacccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25857324 |
cacctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaa |
25857411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 127 - 411
Target Start/End: Original strand, 4835575 - 4835856
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| || ||| |||||||||||| |||||||| |
|
|
| T |
4835575 |
tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcactagtggaaacgtgaaatataaacgtaatgacacagaga--attttagc |
4835672 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcac |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
4835673 |
gtggaaaaccttctcaatgtgagaaagggaaaaaa-ccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcac |
4835771 |
T |
|
| Q |
327 |
ccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4835772 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaa |
4835856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 127 - 411
Target Start/End: Original strand, 24379279 - 24379561
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
|||||| ||||| || ||||||||| |||||||||||||| ||||||||||||| ||||||| ||||| || ||| |||||| ||||| ||||||| | |
|
|
| T |
24379279 |
tgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggcactagtggaaacgtaaaatataaacgtaatgacatagagataattttaac |
24379378 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcac |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24379379 |
gtggaaaaccttctcaatgtgagaaagggaaaaa--ccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaacaacttcac |
24379476 |
T |
|
| Q |
327 |
ccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
24379477 |
ccttaggtggatctccctacaatatatctctcaatttgtaaggaacactctcataaattggctcactatttctttcacaagaaaa |
24379561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 218 - 400
Target Start/End: Original strand, 13465048 - 13465228
Alignment:
| Q |
218 |
aattttagcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
13465048 |
aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaa--ccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa |
13465145 |
T |
|
| Q |
318 |
caacttcacccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctc |
400 |
Q |
| |
|
||| |||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
13465146 |
caagttcaccctcaggtggatctcactacaatgtatctctcaatttgtaaggaacactcttacaaattggttcactatttctc |
13465228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 127 - 402
Target Start/End: Original strand, 27340935 - 27341203
Alignment:
| Q |
127 |
tgttgggaaatg-cctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttag |
225 |
Q |
| |
|
||||||||||| ||| ||||||||||||| | ||||||||||||||||||||| ||||||| |||||| |||||| |||||||||||| ||||||| |
|
|
| T |
27340935 |
tgttgggaaataacctccataatttccctcttttgtgaactcaaaataggcactagcggaaacatgaaatataagcgtaatgacacagaga--attttag |
27341032 |
T |
|
| Q |
226 |
cgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttca |
325 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||| |||| |||| |||||||||| ||||||| |||||| |
|
|
| T |
27341033 |
cgtggaaaaccttctcaatgtaagaaagg---aaaaaccacgggacccttgtacctcttaaa-cttctactacaatgataatggaaatacaataacttct |
27341128 |
T |
|
| Q |
326 |
cccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctc |
402 |
Q |
| |
|
| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27341129 |
c--ttagatggatctcactacaatatatctctcaatttgtaaggaacactctcacaggttggctcactatttctctc |
27341203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 127 - 379
Target Start/End: Complemental strand, 17846051 - 17845803
Alignment:
| Q |
127 |
tgttgggaaatgcctgc-ataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttag |
225 |
Q |
| |
|
|||||||||||| || | ||||||| ||||||||||||||| ||||| |||| || |||| | |||||| |||||| | |||||| |||||||||||| |
|
|
| T |
17846051 |
tgttgggaaatgacttccataattttcctcctccgtgaacttaaaattggcattaggagaaatgtgaaatataagcgtaaagacaca-agagaattttag |
17845953 |
T |
|
| Q |
226 |
cgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttca |
325 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||| | ||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17845952 |
agtggaaaaccttcccaatgtgaggaagg---aaaaaccacaggacctttggacctcttaaa-cttccactataatgataatggaaatacaacaacttca |
17845857 |
T |
|
| Q |
326 |
cccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctca |
379 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17845856 |
cccttaggtgaatctcactacaatatatctctcaatttgtaaggaacactctca |
17845803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 263 - 411
Target Start/End: Complemental strand, 4603740 - 4603594
Alignment:
| Q |
263 |
ccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcacccttaggtggatctcactacaatatatttctcaatt |
362 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
4603740 |
ccacgggacctttgggcctcttaaaccttccactataatgataatggaaatacaacaactttacccttaggtggatctcactacaatatatctttcaatt |
4603641 |
T |
|
| Q |
363 |
tgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||| |||||||| |
|
|
| T |
4603640 |
tgtaaggaaca--cttacaaattggctctctatttctctcacaagaaaa |
4603594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 127 - 407
Target Start/End: Original strand, 38994060 - 38994317
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
||||||||||| | ||||||||||| || ||| |||||| ||||||| ||| ||||||| |||||| || || |||||||| ||||||||||| | |
|
|
| T |
38994060 |
tgttgggaaatacatgcataatttctatcatccatgaacttaaaatagacaccgacggaaacatgaaatataaatgtaatgacacaaagagaattttaac |
38994159 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcac |
326 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| ||||| | |||||||||||||| || |||||||||| |
|
|
| T |
38994160 |
gtggaaaaccttctcaatgcgagaaagggaaaaa--ccacgggaccctcgagcctcttaaaactttcattataatgata--------------------- |
38994236 |
T |
|
| Q |
327 |
ccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaag |
407 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
38994237 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactatcacaaattggctcattatttctctcacaag |
38994317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggca |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24380163 |
tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 127 - 411
Target Start/End: Original strand, 9757212 - 9757496
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
9757212 |
tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaatgacacaaagagaattttagc |
9757311 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaa--cttccactataatgataatgagaatacaacaacttc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9757312 |
gtggaaaaccttctcaatgtgagaaagggaaaaa--ccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaacttc |
9757409 |
T |
|
| Q |
325 |
acccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9757410 |
acccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcaaaagaaaa |
9757496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 144 - 411
Target Start/End: Original strand, 42682854 - 42683114
Alignment:
| Q |
144 |
ataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagcgtggaaaaccttctcaa |
243 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||| || ||||| ||||| || ||| |||||||| | |||| |||||||||||||||||||| |
|
|
| T |
42682854 |
ataatttccttcccccgtgaactcaaaatagacactagcgaaaacgtaaaatataaacgtaatgacacata----atttcagcgtggaaaaccttctcaa |
42682949 |
T |
|
| Q |
244 |
tgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcacccttaggtggatctcac |
343 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
42682950 |
tgtgagaaaggaaaaat---cacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgcatctcac |
42683046 |
T |
|
| Q |
344 |
tacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
42683047 |
tacaatatatctctcaatttgtaaggaacactcttacaaattggctcactatttctctcacaagaaaa |
42683114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 152 - 402
Target Start/End: Original strand, 37286908 - 37287155
Alignment:
| Q |
152 |
cctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagcgtggaaaaccttctcaatgtgagaa |
251 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||||| |||||| || ||| |||||| | ||| ||||||||| ||||||||||||||||||||| || |
|
|
| T |
37286908 |
cctcctccgtgagctcaaaataaacactagcggaaacgtgaaatataaacgtaatgacagaaagaaaattttagcatggaaaaccttctcaatgtgaaaa |
37287007 |
T |
|
| Q |
252 |
agggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaactt-cacccttaggtggatctcactacaata |
350 |
Q |
| |
|
||| ||||| |||||| || ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
37287008 |
aggaaaaat---cacgggacccttaagcatcttaaa-cttccactataataataataagaatacaacaactttcacccttagatggagctcactacaata |
37287103 |
T |
|
| Q |
351 |
tatttctcaatttgtaaggaacactctcacaaattggctcactatttctctc |
402 |
Q |
| |
|
||| ||||||||||||||||||| | ||||||| |||||||| |||||||| |
|
|
| T |
37287104 |
tatctctcaatttgtaaggaacattaacacaaatcggctcactgtttctctc |
37287155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 25002905 - 25002947
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaa |
171 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
25002905 |
tgttgggaaatgc-tgcataatttccct-ctccgtgaactcaaaa |
25002947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 127 - 411
Target Start/End: Original strand, 342217 - 342498
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||| |||||| |||||||| ||| |||||||| |
|
|
| T |
342217 |
tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcactagcagaaacgtgaaatataagcgtaatgacacaaaga--attttagc |
342314 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcac |
326 |
Q |
| |
|
||| |||||||||||||| ||||||| || |||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
342315 |
gtgaaaaaccttctcaatatgagaaatggaagaaa-ccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaacaatttcac |
342413 |
T |
|
| Q |
327 |
ccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
342414 |
ccttaggtgtatctgactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaa |
342498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 127 - 347
Target Start/End: Complemental strand, 22981710 - 22981494
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| | |||||| |||||||| |||||||||||| |
|
|
| T |
22981710 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcactagcggaaacgtgaaaaataagcgtaatgacaca--gagaattttagc |
22981613 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcac |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22981612 |
gtggaaaaccttctcaatgtgagaaaggg--aaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcac |
22981515 |
T |
|
| Q |
327 |
ccttaggtggatctcactaca |
347 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
22981514 |
ccttaggtggatttcactaca |
22981494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 127 - 347
Target Start/End: Original strand, 23806698 - 23806914
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| | |||||| ||||||| ||||||||||||| |
|
|
| T |
23806698 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcactagcggaaacgtgaaaaataagcgtaatgacac--agagaattttagc |
23806795 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcac |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23806796 |
gtggaaaaccttctcaatgtgagaaaggg--aaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcac |
23806893 |
T |
|
| Q |
327 |
ccttaggtggatctcactaca |
347 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
23806894 |
ccttaggtggatttcactaca |
23806914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 31151926 - 31151978
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31151926 |
tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcact |
31151978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 141 - 411
Target Start/End: Complemental strand, 37038112 - 37037848
Alignment:
| Q |
141 |
tgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagcgtggaaaaccttct |
240 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| || |||| ||||| |||| | |||||| ||| |||||||| |||||||||||| |
|
|
| T |
37038112 |
tgcataatttctctcctccgtgaactcaaaataggcactagcgaaaacctgaaatctttgcgtaaagacacatagat--ttttagcgaggaaaaccttct |
37038015 |
T |
|
| Q |
241 |
caatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcacccttaggtggatct |
340 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37038014 |
caatgtgagaaagg---agaaaccacgggacccttgggcctcttaaa-ctttcactataacgataatgagaatacaacaacttcactcttaggtggatct |
37037919 |
T |
|
| Q |
341 |
cactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
|| |||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37037918 |
cattacaatctgactctcaatttataagaaacactctcacaaattggctcactatttctctcacaagaaaa |
37037848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 218 - 397
Target Start/End: Original strand, 26579 - 26754
Alignment:
| Q |
218 |
aattttagcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaa |
317 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||| | |||| |||||||||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
26579 |
aattttagggtggaaaaccttttcaatgtgagtaagg---aaaaactacgggacccttgggcctcttaaa-cttccactctaatgataacgagaatacaa |
26674 |
T |
|
| Q |
318 |
caacttcacccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactattt |
397 |
Q |
| |
|
| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26675 |
ctactccacccttaggtggatctcactacaatttatctctcaatttgtaaggaacactctcacaaattggctcactattt |
26754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 127 - 344
Target Start/End: Original strand, 22763814 - 22764029
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaacgcgaaataaaagcgtcatgacacagagagaattttagc |
226 |
Q |
| |
|
|||||||||||| | ||||||||| | ||||| | ||| | ||||||||||||| | |||||| |||||| |||||| |||| ||| ||||||||||||| |
|
|
| T |
22763814 |
tgttgggaaatgtcagcataattttcttcctcggagaatttaaaataggcactagcagaaacgtgaaatataagcgtaatgatacaaagagaattttagc |
22763913 |
T |
|
| Q |
227 |
gtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttcac |
326 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
22763914 |
atggaaaaccttctcaatatgagaaaggg--aaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaacaacttcac |
22764011 |
T |
|
| Q |
327 |
ccttaggtggatctcact |
344 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
22764012 |
tcttaggtgaatctcact |
22764029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 216 - 411
Target Start/End: Complemental strand, 16698603 - 16698413
Alignment:
| Q |
216 |
agaattttagcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatac |
315 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16698603 |
agaattttagtgtggaaatccttctcaatgtgagaaagggaaaaatt--atgggacccttggacctcttaaaacttccactataatgataatgggaatac |
16698506 |
T |
|
| Q |
316 |
aacaacttcacccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactatttctctcgcaagaaaa |
411 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||| || ||||||||| | |||||||| |
|
|
| T |
16698505 |
aac---ttcacccttatgtggatctcactacaatgtatctctcaatttgtaagaaacactctcacgaattgggtccctatttctcccacaagaaaa |
16698413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 395
Target Start/End: Complemental strand, 33808213 - 33807965
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tatcggaaacgcgaaataaaagcgtcatgacacagagagaatttta |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||| | | ||||||| |
|
|
| T |
33808213 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacg-----taaa------atgacaca-acaaaatttta |
33808126 |
T |
|
| Q |
225 |
gcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttc |
324 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||| |||| | ||||||||||| | ||||||||||| |||||| |||||||| | |||| |
|
|
| T |
33808125 |
gcgtggaaaaccttctcaatgtgagtaagg---aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
33808031 |
T |
|
| Q |
325 |
acccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactat |
395 |
Q |
| |
|
||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
33808030 |
accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
33807965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 395
Target Start/End: Complemental strand, 33811867 - 33811619
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tatcggaaacgcgaaataaaagcgtcatgacacagagagaatttta |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||| | | ||||||| |
|
|
| T |
33811867 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacg-----taaa------atgacaca-acaaaatttta |
33811780 |
T |
|
| Q |
225 |
gcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttc |
324 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||| |||| | ||||||||||| | ||||||||||| |||||| |||||||| | |||| |
|
|
| T |
33811779 |
gcgtggaaaaccttctcaatgtgagtaagg---aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
33811685 |
T |
|
| Q |
325 |
acccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactat |
395 |
Q |
| |
|
||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
33811684 |
accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
33811619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 395
Target Start/End: Complemental strand, 33816785 - 33816537
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tatcggaaacgcgaaataaaagcgtcatgacacagagagaatttta |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||| | | ||||||| |
|
|
| T |
33816785 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacg-----taaa------atgacaca-acaaaatttta |
33816698 |
T |
|
| Q |
225 |
gcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcctcttaaaacttccactataatgataatgagaatacaacaacttc |
324 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||| |||| | ||||||||||| | ||||||||||| |||||| |||||||| | |||| |
|
|
| T |
33816697 |
gcgtggaaaaccttctcaatgtgagtaagg---aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
33816603 |
T |
|
| Q |
325 |
acccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcacaaattggctcactat |
395 |
Q |
| |
|
||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
33816602 |
accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
33816537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 16698670 - 16698609
Alignment:
| Q |
127 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactatcggaaac |
188 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
16698670 |
tgttgggaaatatatgcataatttccatcctccgtgaactcagaataggcactagcggaaac |
16698609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 182 - 402
Target Start/End: Complemental strand, 27642259 - 27642044
Alignment:
| Q |
182 |
cggaaacgcgaaataaaagcgtcatgacacagagagaattttagcgtggaaaaccttctcaatgtgagaaagggnnnnnnnccacggaacccttgggcct |
281 |
Q |
| |
|
|||||||| |||||| |||||| |||| ||| || ||||||| ||||| |||||||||||||||||||||||| ||||| ||| ||| || |
|
|
| T |
27642259 |
cggaaacgtgaaatataagcgtaatgataca-ag-gaattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaat--cacggggtcctcgggtct |
27642164 |
T |
|
| Q |
282 |
cttaaaacttccactataatgataatgagaatacaacaacttcacccttaggtggatctcactacaatatatttctcaatttgtaaggaacactctcaca |
381 |
Q |
| |
|
|||||| ||||||||||||| |||||| ||||| |||||||||| | ||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
27642163 |
cttaaa-cttccactataataataatgggaataaaacaacttcatctttaagtggatctcactacaatatatctctctatttgtaaggaacactctcaca |
27642065 |
T |
|
| Q |
382 |
aattggctcactatttctctc |
402 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
27642064 |
aattgacttcctatttctctc |
27642044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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