View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19781_low_7 (Length: 301)
Name: NF19781_low_7
Description: NF19781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19781_low_7 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 141 - 301
Target Start/End: Original strand, 10098995 - 10099149
Alignment:
| Q |
141 |
tattatatatatgggcagatattttgagnnnnnnnatcttcaccaaatcaatcttgattttttggggcttgggtggtggtgtgttaatgttatgatgaga |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10098995 |
tattatatatatgggcagatattttgagtttttttatcttcaccaaatcaatcttggtgttttggggcttgggtggtggtgtgttac------gatgaga |
10099088 |
T |
|
| Q |
241 |
ggacaaatatgtggtgagattaaggacaagaaaaactctcacctgaggagagtttctactc |
301 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10099089 |
ggacaaatatgtggtgatattaaggacaagaaaaactctcacctgaggagagtttctactc |
10099149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 10098387 - 10098517
Alignment:
| Q |
18 |
aagatgaagttgatgacaaattnnnnnnntgtgagattttgaattaaggaatgatatattgtgtcaagtgtaaattctcatctaaatcccacatggagct |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10098387 |
aagatgaagttgatgacaaattaaaaaaatgtgagattttgaattaaggaatgatatattgtgtcaagtgtaaattctcatctaaatcccacatggagc- |
10098485 |
T |
|
| Q |
118 |
gtgtaggaag--aaaagtagagagttattatat |
148 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
|
|
| T |
10098486 |
-tgtaggaagaaaaaagtagagagttattatat |
10098517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University