View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19781_low_9 (Length: 250)
Name: NF19781_low_9
Description: NF19781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19781_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 38153243 - 38153478
Alignment:
| Q |
13 |
attctagttcttgtattaaagtagaacatttatatcactatctcatttccaaagtaaaattctgatgttaattcatgtctatattacataatgctgagaa |
112 |
Q |
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| T |
38153243 |
attctagttctagtattaaagtagaacatttatatcactatctcatttccaaagtaaaattctgatgttaattcatgtctatattacataatgctgagaa |
38153342 |
T |
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| Q |
113 |
tttagtgttttcacaatgcaaatttggggaatgcttgtcttttcaaacttatatagtaataagtttcattgattgctgcatgaatggtgttccaatcttg |
212 |
Q |
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| T |
38153343 |
tttagtgttttcacaatgcaaatttggggaatgcttgtcttttcaaacttatatagtaataagtttcattgattgctgcatgaatggtgttccaatcttg |
38153442 |
T |
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| Q |
213 |
gtcctagatattgctgtagcgattagccgcatataa |
248 |
Q |
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| T |
38153443 |
gtcctagatattgctgtagcgattagccgcatataa |
38153478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 38169099 - 38169223
Alignment:
| Q |
38 |
acatttatatcactatctcatttccaaagtaaaattctgatgttaattcatgtctatattacataatgctgagaatttagtgttttcacaatgcaaattt |
137 |
Q |
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| T |
38169099 |
acatttatatcactatatcactttgaatgtacaattctgaggtgaattcatgtctatgttacata-tgccgagaatttagtgttttgacaatgcaaattt |
38169197 |
T |
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| Q |
138 |
ggggaatgcttgtcttttcaaactta |
163 |
Q |
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| T |
38169198 |
ggggaatgttcatcttttcaaactta |
38169223 |
T |
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