View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_11 (Length: 531)

Name: NF19782_high_11
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_11
NF19782_high_11
[»] chr1 (8 HSPs)
chr1 (20-516)||(12774750-12775256)
chr1 (203-516)||(12804511-12804824)
chr1 (202-516)||(50788818-50789132)
chr1 (195-516)||(42286930-42287251)
chr1 (202-417)||(4160289-4160504)
chr1 (203-427)||(36989242-36989466)
chr1 (203-417)||(31644058-31644272)
chr1 (203-402)||(28496106-28496305)
[»] chr8 (2 HSPs)
chr8 (202-417)||(5788722-5788937)
chr8 (221-427)||(33186637-33186843)
[»] chr2 (3 HSPs)
chr2 (203-340)||(40040778-40040915)
chr2 (203-498)||(42898129-42898424)
chr2 (202-405)||(38895856-38896059)
[»] chr4 (2 HSPs)
chr4 (203-360)||(22085506-22085663)
chr4 (201-426)||(30518146-30518371)
[»] chr7 (2 HSPs)
chr7 (201-369)||(40749350-40749518)
chr7 (221-333)||(44150818-44150930)
[»] chr3 (1 HSPs)
chr3 (218-387)||(52248370-52248539)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 20 - 516
Target Start/End: Complemental strand, 12775256 - 12774750
Alignment:
Q  20 aaactgcaatttccaccatatcaatcatgttttctgctagtatatataaatgtttgcagcgttattgcgaccacaatttaaaccatgctatcaaatatat 119  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  12775256 aaactgcaatttcgaccatatcgatcatgttttctgctagtatatataaatgtttgtagcgtcattgcgaccacaatttaaaccatgctatcaaatatat 12775157  T
Q  120 atata----------agattgcattaacaaaaatcgatagcgaaaaaactcgcagtagaaaaattggaactgatttattaggtatatgtttattacctgg 209  Q
    |||||          ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12775156 atatatatatatataagattgcattaacaaaaatcgatagcgaaaaaactcgcaatagaaaaattggaactgatttattaggtatatgtttattacctgg 12775057  T
Q  210 agaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12775056 agaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaacacttttc 12774957  T
Q  310 acacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacacatgttggt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12774956 acacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgttggt 12774857  T
Q  410 tctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgct 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12774856 tctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgct 12774757  T
Q  510 ccctttg 516  Q
    |||||||    
T  12774756 ccctttg 12774750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 203 - 516
Target Start/End: Original strand, 12804511 - 12804824
Alignment:
Q  203 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 302  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  303 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 402  Q
    |||||||||| ||||| ||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12804611 acttttcacatttccactttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacaca 12804710  T
Q  403 tgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaa 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12804711 tgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaa 12804810  T
Q  503 ttttgctccctttg 516  Q
    ||||||||||||||    
T  12804811 ttttgctccctttg 12804824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 202 - 516
Target Start/End: Original strand, 50788818 - 50789132
Alignment:
Q  202 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 301  Q
    |||||||||||||||||||||||||||||| ||||| ||  | || ||||||||||||||||| || ||||||||||||||||||||||| ||||||||     
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagag 50788917  T
Q  302 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 401  Q
    ||||| |||||||||||||| ||||||||||| || | | | |||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |    
T  50788918 cacttatcacacttccatttcttctcaccatgtttgcgagagtagtgtttcttaatcccagtgaggtcaccaagtgcccttgaagggtcatgatgaacgc 50789017  T
Q  402 atgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaa 501  Q
    |||| || || ||||||| ||||||||||||||| || |||||  || |||| ||||| |||||||||||||| |||||||||||||| || || ||||     
T  50789018 atgtgggctcaggacacagataaacctttctcttaggttcttttgtagtcttctgcttaagcttccaaggcaagttgtgtcctcttctgtgaagctgtag 50789117  T
Q  502 attttgctccctttg 516  Q
    ||||||||| |||||    
T  50789118 attttgctctctttg 50789132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 195 - 516
Target Start/End: Complemental strand, 42287251 - 42286930
Alignment:
Q  195 atgtttattacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatattt 294  Q
    |||||| |||||| |||||||| |||||||| ||||||||||| ||  |||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42287251 atgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatattt 42287152  T
Q  295 cttagaacacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatgg 394  Q
    ||| || || |||||||| ||||| || |||||||| ||||| | | |  | || || ||||||||||| || || || | ||| ||||||||||| ||     
T  42287151 ctttgagcatttttcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtga 42287052  T
Q  395 tgaacacatgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgta 494  Q
    || || ||||| || || ||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||| | |||||||||||||||||| |    
T  42287051 tggacgcatgtgggctcaggacacaaataaacctttctccttggctctttgttggacttttgctttagcttccaaggaagattgtgtcctcttctatgaa 42286952  T
Q  495 gttgtaaattttgctccctttg 516  Q
    |||| | |||||||||||||||    
T  42286951 gttgaagattttgctccctttg 42286930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 202 - 417
Target Start/End: Complemental strand, 4160504 - 4160289
Alignment:
Q  202 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 301  Q
    |||||| |||||||| || |||||||||||  ||||||| ||||| |||||| | || ||||||||||||||||| || ||||| ||||||   ||||||    
T  4160504 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 4160405  T
Q  302 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 401  Q
    || || ||||||||||| || |||||||| ||||| || ||| |||| ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||    
T  4160404 catttctcacacttccacttcttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacac 4160305  T
Q  402 atgttggttctggaca 417  Q
    ||||||| ||||||||    
T  4160304 atgttggctctggaca 4160289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 203 - 427
Target Start/End: Complemental strand, 36989466 - 36989242
Alignment:
Q  203 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 302  Q
    |||||||| ||||  || |||||||||||| | || ||| | ||||||||  | || |||||||||||||||||||||||||||||||||||||||||||    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  303 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 402  Q
    |||| ||||| ||||| ||||||||||||||||||||| || |||| || ||||||||||| || || ||||| || |||| ||||| |||||| |||||    
T  36989366 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaattccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 36989267  T
Q  403 tgttggttctggacacaaataaacc 427  Q
    ||  ||||| ||||| | |||||||    
T  36989266 tgaaggttcaggacaaacataaacc 36989242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 203 - 417
Target Start/End: Original strand, 31644058 - 31644272
Alignment:
Q  203 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 302  Q
    |||||||| || || || ||||| |||||| |||| ||   ||||||||| || ||||| ||||||||||||||||| |||||||||||  |||| || |    
T  31644058 tacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagc 31644157  T
Q  303 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 402  Q
    |||| ||||| |||||||||||||||||||| ||||||  ||| |||||||||||||| || || || ||||||||||||||||||| ||| ||||||||    
T  31644158 acttatcacatttccattttttctcaccatgttttctactataatgtttcttaattcctgtaagatctccaagagcccttgaagggttatgatgaacaca 31644257  T
Q  403 tgttggttctggaca 417  Q
    ||  || ||||||||    
T  31644258 tgaaggctctggaca 31644272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 203 - 402
Target Start/End: Original strand, 28496106 - 28496305
Alignment:
Q  203 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 302  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  303 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 402  Q
    | |||||||| ||||| || |||||||| |||||||||  | |||| || || || || |||||||| ||||| || ||||||||||||||||| |||||    
T  28496206 atttttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 28496305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 202 - 417
Target Start/End: Original strand, 5788722 - 5788937
Alignment:
Q  202 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 301  Q
    |||||| |||||||| || ||||||||||||||||| ||  |||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||    
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  302 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 401  Q
    ||||||||||| ||||| || |||||||||||||||||  || |||||||||| |||||||| |  || || |  || ||||| || ||||| || ||||    
T  5788822 cacttttcacatttccacttcttctcaccatgctttctggaaaagtgtttcttgattccagtcaaatcccctaatgctcttgatggatcatgatgcacac 5788921  T
Q  402 atgttggttctggaca 417  Q
    | ||||||||||||||    
T  5788922 aagttggttctggaca 5788937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 221 - 427
Target Start/End: Complemental strand, 33186843 - 33186637
Alignment:
Q  221 ccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccatt 320  Q
    ||||| |||||| |||||||  ||| |||||||   ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |    
T  33186843 ccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccact 33186744  T
Q  321 ttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaa 420  Q
    ||||||||||||| |||||| || |||| || || || ||||| |  || || | ||| || ||||| ||||| |||||||| || ||||| ||||| |     
T  33186743 ttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaagtaggttcaggacaaac 33186644  T
Q  421 ataaacc 427  Q
    |||||||    
T  33186643 ataaacc 33186637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 203 - 340
Target Start/End: Complemental strand, 40040915 - 40040778
Alignment:
Q  203 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 302  Q
    ||||||||||| || |||||||| |||||||| ||||| ||||| |||||| |||||  |||||| ||||||||||||||||| ||||||||||||||||    
T  40040915 tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttagaac 40040816  T
Q  303 acttttcacacttccattttttctcaccatgctttcta 340  Q
    |||| ||||||||||| || |||||||| |||||||||    
T  40040815 acttatcacacttccacttcttctcaccgtgctttcta 40040778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 203 - 498
Target Start/End: Complemental strand, 42898424 - 42898129
Alignment:
Q  203 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 302  Q
    ||||| |||||||| || |||||||||||||| || ||  | || ||||| || || || ||||||||||| || |||||||| ||||| |||||||| |    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  303 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 402  Q
    |||| ||||| ||||| || |||||||| ||||||||  |  |||| ||||| || ||||| ||||| || |  || ||||| ||||||||||| |||||    
T  42898324 acttgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacaca 42898225  T
Q  403 tgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttg 498  Q
     |||||||||||||||| |||||| ||  || ||  ||| ||| |  |  ||||||| | |||||| |||||||||||||||||| |||| |||||    
T  42898224 agttggttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttg 42898129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 405
Target Start/End: Original strand, 38895856 - 38896059
Alignment:
Q  202 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 301  Q
    |||||| || |||| ||||||||| |||||| | || ||  |||||||||||||||| || || ||||||||||| ||||||||||||||    || ||     
T  38895856 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 38895955  T
Q  302 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 401  Q
    ||||| ||||||||||| || |||||||| || || ||| || |||| ||||| || ||||| |  || || | |||||||||||| | ||  |||||||    
T  38895956 cacttctcacacttccacttcttctcaccgtgtttcctacaaaagtgcttctttatcccagttaaatctcccaaagcccttgaaggatgattatgaacac 38896055  T
Q  402 atgt 405  Q
    ||||    
T  38896056 atgt 38896059  T

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Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 203 - 360
Target Start/End: Original strand, 22085506 - 22085663
Alignment:
Q  203 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 302  Q
    ||||||||||| |  |||||||| |||||| | |||||  |||| |||||| ||||   |||||||||||||||||||||||| ||||||||||| ||||    
T  22085506 tacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaac 22085605  T
Q  303 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattcc 360  Q
    |||||||||||||||| || ||||||||||| ||||||  ||| |||||||| |||||    
T  22085606 acttttcacacttccacttcttctcaccatgttttctactataatgtttctttattcc 22085663  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 201 - 426
Target Start/End: Original strand, 30518146 - 30518371
Alignment:
Q  201 attacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttaga 300  Q
    ||||||| || |||| ||| |||||||||||| | || ||  |||||||||| || || || |||||||||||||| || |||||||||||    || ||    
T  30518146 attaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttga 30518245  T
Q  301 acacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaaca 400  Q
     ||||| ||||||||||| || || ||||||||||||||| || |||| || || || ||||| | ||| ||||| ||||||||||| |||||||| |||    
T  30518246 gcacttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggaca 30518345  T
Q  401 catgttggttctggacacaaataaac 426  Q
    || |||   |||||||||| ||||||    
T  30518346 caagttttctctggacacacataaac 30518371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 201 - 369
Target Start/End: Complemental strand, 40749518 - 40749350
Alignment:
Q  201 attacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttaga 300  Q
    ||||||| |||||||| || ||||| |||||  |||| ||  ||||||||||||| ||||  |||||||||||||||||||| || ||||||||||| ||    
T  40749518 attaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttgga 40749419  T
Q  301 acacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtc 369  Q
    |||||| |||||||||||||| ||||| ||||| ||||||  | | |||||||| ||||| ||||||||    
T  40749418 acacttatcacacttccatttcttctcgccatgttttctactaaaatgtttctttattccggtgaggtc 40749350  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 44150818 - 44150930
Alignment:
Q  221 ccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccatt 320  Q
    ||||| |||||| | || ||| ||||||||||||| ||    ||||| |||||||| ||||||||||||||| | ||||| ||||| ||||| |||||||    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  321 ttttctcaccatg 333  Q
    | |||||||||||    
T  44150918 tcttctcaccatg 44150930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 387
Target Start/End: Original strand, 52248370 - 52248539
Alignment:
Q  218 gtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttcc 317  Q
    |||||||| |||||| |||||||  |||| |||||  ||||   |||| ||||| ||||| |||   |||| ||||| ||||||||   |||||| ||||    
T  52248370 gtgccacaatcacatttatactctctagttccacagctcttcatatgaactttcaaatcacatttcgcagcgtattttttagaacaacgttcacatttcc 52248469  T
Q  318 attttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagg 387  Q
    |||| |||||||||||||||||| || |||| || || | ||| |||||||| || || || ||||||||    
T  52248470 atttcttctcaccatgctttctacaaaagtgctttttcactcctgtgaggtcaccgagtgctcttgaagg 52248539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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