View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_14 (Length: 467)
Name: NF19782_high_14
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 24108330 - 24107889
Alignment:
| Q |
18 |
ggaatttattattactaattgatgnnnnnnnnnggagagaattaattgatgttattataataacaataatcatcatcatataaaactggagactctattg |
117 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24108330 |
ggaatttattattactaattgatgtttttttttggagagaattaattgatgttattataataacaataatcatcatcatataaaattggagactctattg |
24108231 |
T |
|
| Q |
118 |
ttgataaaatctttgatttgcaaaatcaattgagaagcctcgggaacattaggaaacgcataaaaaccatgcatcatgtttggatattcaatcaactgag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24108230 |
ttgataaaatctttgatttgcaaaatcaattgagaagcctcgggaacattaggaaacgcataaaaaccatgcatcatgtttggatattcaatcaactgag |
24108131 |
T |
|
| Q |
218 |
cnnnnnnnccagatattttcaaccattcataatacctcttttgccaatcatataacccgtccaacccacccacaaaaacaagcgtatctggataatctaa |
317 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24108130 |
ctttttttccagatattttcaaccattcataatacctcttttgccaatcatataacccgtccaacccacccacaaaaacaagcgtatctggataatctaa |
24108031 |
T |
|
| Q |
318 |
tcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaaccctctggcaaaaacaccttccacatccaatccgtcctc |
417 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24108030 |
tcgggataaatcctccgcattcggcccactaacattagctgcgttgtgatctcggttcgaaccctctggcaaaaacaccttccacatccaatctgtcctc |
24107931 |
T |
|
| Q |
418 |
gccatcgaaatcatcaacgatccttcaaggcgaatctctgct |
459 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
24107930 |
gccatcgaaatcatcaacgatccttcaaggcgaatctctgct |
24107889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 115 - 421
Target Start/End: Complemental strand, 24189715 - 24189409
Alignment:
| Q |
115 |
ttgttgataaaatctttgatttgcaaaatcaattgagaagcctcgggaacattaggaaacgcataaaaaccatgcatcatgtttggatattcaatcaact |
214 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||| |||| || || |||| || |||||| ||| ||||||||| | ||||||||||||||||||||||| |
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| T |
24189715 |
ttgttgataaaatccttgacttgcataatcaactgagtagattcaggaaaatcaggaaaaacatgaaaaccatgaaccatgtttggatattcaatcaact |
24189616 |
T |
|
| Q |
215 |
gagcnnnnnnnccagatattttcaaccattcataatacctcttttgccaatcatataacccgtccaacccacccacaaaaacaagcgtatctggataatc |
314 |
Q |
| |
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||| ||| || |||||||||| |||||||||||||||||||||||| || || |||||||| ||||||||||||||||| |||||||| |
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| T |
24189615 |
cagctttttttccacattttttcaaccaatcataatacctcttttgccaatcaatcaaaggatcaaacccaccaacaaaaacaagcgtatccggataatc |
24189516 |
T |
|
| Q |
315 |
taatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaaccctctggcaaaaacaccttccacatccaatccgtc |
414 |
Q |
| |
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|| | || |||||||||||||||||||||| |||||| | || ||||| |||| || |||||||| |||||||| |||||||||||||| ||| |
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| T |
24189515 |
caaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtccgatccctctggtaaaaacactttccacatccaatcagtc |
24189416 |
T |
|
| Q |
415 |
ctcgcca |
421 |
Q |
| |
|
|| |||| |
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|
| T |
24189415 |
cttgcca |
24189409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 115 - 341
Target Start/End: Complemental strand, 24179909 - 24179683
Alignment:
| Q |
115 |
ttgttgataaaatctttgatttgcaaaatcaattgagaagcctcgggaacattaggaaacgcataaaaaccatgcatcatgtttggatattcaatcaact |
214 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||| |||| || || |||| || |||||| ||| ||||||||| | ||||||||||||||||||||||| |
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|
| T |
24179909 |
ttgttgataaaatccttgacttgcataatcaactgagtagattcaggaaaatcaggaaaaacatgaaaaccatgaaccatgtttggatattcaatcaact |
24179810 |
T |
|
| Q |
215 |
gagcnnnnnnnccagatattttcaaccattcataatacctcttttgccaatcatataacccgtccaacccacccacaaaaacaagcgtatctggataatc |
314 |
Q |
| |
|
||| ||| || |||||||||| |||||||||||||||||||||||| || || |||||||| ||||||||||||||||| |||||||| |
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| T |
24179809 |
cagcttttttcccacattttttcaaccaatcataatacctcttttgccaatcaatcaaaggatcaaacccaccaacaaaaacaagcgtatccggataatc |
24179710 |
T |
|
| Q |
315 |
taatcgggataaatcctccgcgttcgg |
341 |
Q |
| |
|
|| | || ||||||||||||||||| |
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|
| T |
24179709 |
caaacccgacaaatcctccgcgttcgg |
24179683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 425
Target Start/End: Complemental strand, 24113296 - 24113048
Alignment:
| Q |
177 |
ataaaaaccatgcatcatgtttggatattcaatcaactgagcnnnnnnnccagatattttcaaccattcataatacctcttttgccaatcatataacccg |
276 |
Q |
| |
|
||||||| |||| ||||| |||||||||| ||| |||| ||| ||| || | |||||||| ||||||||||||||||||||||||| ||| |
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| T |
24113296 |
ataaaaagcatgaatcatatttggatattgaattaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcatttaaagga |
24113197 |
T |
|
| Q |
277 |
tccaacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttg |
376 |
Q |
| |
|
|| || ||||| | ||||||||||||||| |||||||| || | || |||||||||||||||||||||| |||||| | || ||||| |||| || |
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|
| T |
24113196 |
tcaaatccaccaataaaaacaagcgtatccggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtctg |
24113097 |
T |
|
| Q |
377 |
aaccctctggcaaaaacaccttccacatccaatccgtcctcgccatcga |
425 |
Q |
| |
|
| ||||| || |||||| | ||||||||||||||||||||||||||||| |
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| T |
24113096 |
atccctccggtaaaaacgctttccacatccaatccgtcctcgccatcga |
24113048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 119 - 422
Target Start/End: Complemental strand, 24152642 - 24152339
Alignment:
| Q |
119 |
tgataaaatctttgatttgcaaaatcaattgagaagcctcgggaacattaggaaacgcataaaaaccatgcatcatgtttggatattcaatcaactgagc |
218 |
Q |
| |
|
|||| ||||| |||| ||||| ||||||||||| || || || | || |||||| ||||||| |||| | ||||||||| ||||||||||||| ||| |
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|
| T |
24152642 |
tgatgaaatccttgacttgcataatcaattgagtagattcaggcaaatcaggaaaaatataaaaaacatgaaccatgtttgggtattcaatcaactcagc |
24152543 |
T |
|
| Q |
219 |
nnnnnnnccagatattttcaaccattcataatacctcttttgccaatcatataacccgtccaacccacccacaaaaacaagcgtatctggataatctaat |
318 |
Q |
| |
|
||| || |||||||||| | ||||||||||||||||||||||| ||| || |||||||| | |||||||| ||| || ||| |||| || |
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|
| T |
24152542 |
tttttttccacattttttcaaccaattataatacctcttttgccaatcatttaaaggatcaaacccaccaataaaaacaatcgtctccggaaaatccaaa |
24152443 |
T |
|
| Q |
319 |
cgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttgaaccctctggcaaaaacaccttccacatccaatccgtcctcg |
418 |
Q |
| |
|
| |||||||||||||| |||||||| || |||||| | || ||||| |||||||| ||||| || ||||||||||||||| |||||||||||| | |
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|
| T |
24152442 |
cccgataaatcctccgcattcggcccgcttacattaacggcgccatgatcccggtttgatccctccggtaaaaacaccttccaccaccaatccgtccttg |
24152343 |
T |
|
| Q |
419 |
ccat |
422 |
Q |
| |
|
|||| |
|
|
| T |
24152342 |
ccat |
24152339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 177 - 416
Target Start/End: Complemental strand, 24169411 - 24169172
Alignment:
| Q |
177 |
ataaaaaccatgcatcatgtttggatattcaatcaactgagcnnnnnnnccagatattttcaaccattcataatacctcttttgccaatcatataacccg |
276 |
Q |
| |
|
||||||| |||| ||||| |||||||||| |||||||| ||| ||| || | |||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
24169411 |
ataaaaagcatgaatcatatttggatattgaatcaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcatttaaagga |
24169312 |
T |
|
| Q |
277 |
tccaacccacccacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcgttcggcccactaacattagctgcattgtgatctcggtttg |
376 |
Q |
| |
|
|| || ||||| | ||||||||||||||| |||||||| || | || ||||||||||| |||||||| || |||||| | ||| ||||| ||||| | |
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|
| T |
24169311 |
tcaaatccaccaataaaaacaagcgtatccggataatccaaacccgacaaatcctccgcattcggcccgcttacattaacagcaccatgatcccggttcg |
24169212 |
T |
|
| Q |
377 |
aaccctctggcaaaaacaccttccacatccaatccgtcct |
416 |
Q |
| |
|
| ||||| || |||||||||||||| |||||||||||| |
|
|
| T |
24169211 |
atccctccggtcaaaacaccttccaccaccaatccgtcct |
24169172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 24214543 - 24214503
Alignment:
| Q |
226 |
ccagatattttcaaccattcataatacctcttttgccaatc |
266 |
Q |
| |
|
|||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
24214543 |
ccagattttctcaaccactcataatacctcttttgccaatc |
24214503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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