View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_16 (Length: 458)

Name: NF19782_high_16
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_16
NF19782_high_16
[»] chr8 (10 HSPs)
chr8 (1-442)||(38934376-38934805)
chr8 (36-214)||(21137929-21138106)
chr8 (38-123)||(12478177-12478262)
chr8 (45-120)||(8968413-8968488)
chr8 (80-129)||(4895746-4895795)
chr8 (36-115)||(33091936-33092008)
chr8 (78-148)||(17845182-17845252)
chr8 (81-123)||(18983684-18983726)
chr8 (77-123)||(24674568-24674614)
chr8 (75-123)||(6377616-6377664)
[»] chr5 (9 HSPs)
chr5 (38-214)||(13695092-13695268)
chr5 (36-153)||(7159521-7159638)
chr5 (39-211)||(9738436-9738608)
chr5 (77-123)||(19935112-19935158)
chr5 (39-200)||(39605758-39605911)
chr5 (89-124)||(36320234-36320269)
chr5 (78-128)||(20355675-20355725)
chr5 (105-146)||(16667440-16667481)
chr5 (107-148)||(17192614-17192655)
[»] chr2 (11 HSPs)
chr2 (45-214)||(34756768-34756937)
chr2 (45-214)||(15429255-15429424)
chr2 (71-144)||(42152507-42152580)
chr2 (45-123)||(28816759-28816836)
chr2 (71-153)||(4570453-4570535)
chr2 (36-144)||(43927231-43927339)
chr2 (102-148)||(12000637-12000683)
chr2 (102-148)||(17249432-17249478)
chr2 (79-123)||(21134948-21134992)
chr2 (104-152)||(35531900-35531948)
chr2 (108-148)||(304080-304120)
[»] chr3 (10 HSPs)
chr3 (36-214)||(43447629-43447807)
chr3 (45-121)||(38239535-38239611)
chr3 (36-123)||(41199891-41199977)
chr3 (77-129)||(3143002-3143054)
chr3 (75-123)||(3172849-3172897)
chr3 (79-121)||(32234040-32234082)
chr3 (78-123)||(1319072-1319117)
chr3 (78-145)||(28715173-28715240)
chr3 (140-215)||(38239613-38239688)
chr3 (82-128)||(497462-497508)
[»] chr1 (15 HSPs)
chr1 (36-128)||(16640281-16640373)
chr1 (36-123)||(33169282-33169369)
chr1 (47-123)||(26686426-26686502)
chr1 (45-153)||(37574970-37575078)
chr1 (142-214)||(42817708-42817780)
chr1 (77-135)||(33069963-33070022)
chr1 (71-121)||(11647222-11647272)
chr1 (102-148)||(49898489-49898535)
chr1 (77-122)||(18225168-18225213)
chr1 (102-146)||(4642028-4642072)
chr1 (77-115)||(9923871-9923909)
chr1 (77-123)||(11815466-11815512)
chr1 (102-148)||(34459222-34459268)
chr1 (77-117)||(11910160-11910200)
chr1 (75-115)||(41094004-41094044)
[»] chr4 (11 HSPs)
chr4 (36-144)||(31928971-31929079)
chr4 (73-144)||(41955359-41955430)
chr4 (45-121)||(6017154-6017230)
chr4 (77-145)||(9438123-9438191)
chr4 (77-123)||(12115943-12115989)
chr4 (77-123)||(36083584-36083630)
chr4 (55-123)||(15034475-15034542)
chr4 (78-128)||(5284261-5284311)
chr4 (78-120)||(9905724-9905766)
chr4 (77-115)||(24621969-24622007)
chr4 (161-214)||(6017249-6017302)
[»] scaffold0108 (1 HSPs)
scaffold0108 (45-123)||(20962-21040)
[»] chr7 (4 HSPs)
chr7 (77-123)||(27297573-27297619)
chr7 (91-123)||(3355929-3355961)
chr7 (89-121)||(7802724-7802756)
chr7 (105-148)||(3012426-3012469)
[»] chr6 (7 HSPs)
chr6 (36-121)||(5582504-5582589)
chr6 (77-114)||(9229568-9229605)
chr6 (77-112)||(11761425-11761460)
chr6 (77-123)||(21053650-21053696)
chr6 (77-123)||(21054044-21054090)
chr6 (77-119)||(21076908-21076950)
chr6 (91-123)||(13480779-13480811)
[»] scaffold0655 (1 HSPs)
scaffold0655 (82-123)||(1516-1557)
[»] scaffold0127 (2 HSPs)
scaffold0127 (77-129)||(28488-28540)
scaffold0127 (77-129)||(35394-35446)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 38934376 - 38934805
Alignment:
Q  1 tcagcttctactttctttgtagcaagcccagctacttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaat------accttcatgggta 94  Q
    |||||||||||||| ||||||| ||| ||| |||||||||||| ||||| |||| ||||||||||| ||| ||||||||||      ||||||||| |||    
T  38934376 tcagcttctactttttttgtagtaagtccaactacttcctgcagattttatcaaagatttagatttttagataaatgtaattgtaataccttcatgagta 38934475  T
Q  95 attgtttccttaggattttaggatccgcaaaaaagatatattcgcaggaaatgttcaatcatttgtaagaatgaaataacataatatgaaaagtttataa 194  Q
    ||||||||||||| ||||||| |||||||  || | |||||| ||||||               ||| ||||||| |||||| |||| |||| |||||||    
T  38934476 attgtttccttagaattttagaatccgcaggaa-gttatatttgcaggac--------------gtaggaatgaa-taacattatataaaaaatttataa 38934559  T
Q  195 aattatccgcagaaaatgtg--ttagaaagctcataaaattactggctctgtgccactgccgacttacactttgaagtttgcaggtagcacctcctttgt 292  Q
    |||||||||| | || | |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38934560 aattatccgctgcaatttttgcttagaaagctcataaaattactggctctgtgccactgccgacttacactttgaagtttgcaggtagcacctcctttgt 38934659  T
Q  293 cggtccacggttggactccccctcaacttacaaatgatgtactcatagcaccctaaatggaccccacacccgcaccaccaaacctaatttcaattaaaaa 392  Q
    |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38934660 c----cacggttggactccccctcaacttacaaatgatgtactcatagcaccctaaatggaccccacacccgcaccaccaaacctaatttcaattaaaaa 38934755  T
Q  393 ccttcttcctctctcactctggannnnnnntccaccaccacacgctctct 442  Q
    |||||||||||||||||||||||       ||| ||||||||||||||||    
T  38934756 ccttcttcctctctcactctggaccccccctcctccaccacacgctctct 38934805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 21138106 - 21137929
Alignment:
Q  36 ttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatat 135  Q
    ||||||| ||||||| ||||||||||| || | ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||  |||| ||||     
T  21138106 ttcctgcgaattttgccaaggatttaggttcccaggtaaatgtaataccttcgtgggtaattgtttccttatgattttaggattcgcaggaaaggtata- 21138008  T
Q  136 tcgcaggaaatgttcaatcatttgtaagaatgaaataacataatatgaaaagtttataaaattatccgcagaaaatgtg 214  Q
    ||| ||||||||| |||| ||    | ||| ||| |||||| |||||  |||| |||||| ||||| ||||||||||||    
T  21138007 tcgtaggaaatgtgcaattatccacatgaaggaagtaacattatatgggaagtctataaagttatctgcagaaaatgtg 21137929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 12478177 - 12478262
Alignment:
Q  38 cctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    ||||| ||||||| ||||||||| | || | |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  12478177 cctgcgaattttgccaaggattttggttcccaggtaaatgtaatatcttcgtgggtaattgtttccttaggattttaggatccgca 12478262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 8968413 - 8968488
Alignment:
Q  45 attttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatcc 120  Q
    |||||| ||||||||||| || | ||||||||||||||||||| |   ||||||||||||||||||||||||||||    
T  8968413 attttgccaaggatttaggttcccaggtaaatgtaataccttcgtaaataattgtttccttaggattttaggatcc 8968488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 4895746 - 4895795
Alignment:
Q  80 ataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaag 129  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  4895746 ataccttcgtggttaattgtttccttaggattttaggatccgcataaaag 4895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 33091936 - 33092008
Alignment:
Q  36 ttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttag 115  Q
    |||||||| |||||||||||||||||| ||||       | ||||||||||| |||||||||||||||||||||||||||    
T  33091936 ttcctgcagattttgtcaaggatttaggtttc-------aggtaataccttcgtgggtaattgtttccttaggattttag 33092008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 17845182 - 17845252
Alignment:
Q  78 taataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcgcaggaaatgt 148  Q
    ||||||||||||   ||||||||||||| |||| ||||||||||||| |||| ||||| ||||| ||||||    
T  17845182 taataccttcatctttaattgtttccttgggatcttaggatccgcaagaaaggtatatccgcagaaaatgt 17845252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 18983726 - 18983684
Alignment:
Q  81 taccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    ||||||| |||||||||||||||| |||||||||||| |||||    
T  18983726 taccttcgtgggtaattgtttcctgaggattttaggaaccgca 18983684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 24674614 - 24674568
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    ||||||||||| ||||||||| |||||||||||||||| | ||||||    
T  24674614 gtaataccttcgtgggtaattatttccttaggattttaagttccgca 24674568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 6377616 - 6377664
Alignment:
Q  75 atgtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||| | |||| |||||||||||||||| | ||||||||||||||||    
T  6377616 atgtaacagcttcgtgggtaattgtttcctgaagattttaggatccgca 6377664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 214
Target Start/End: Original strand, 13695092 - 13695268
Alignment:
Q  38 cctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattc 137  Q
    |||||| |||||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  ||||  |    
T  13695092 cctgcagattttgccaaggatttaggttcccaggtaaatgtaataccttcatgggtaattgtttccttacgattttaggatccgcaagaaaagtataccc 13695191  T
Q  138 gcaggaaatgttcaatcatttgtaagaatgaaataacataatatgaaaagtttataaaattatccgcagaaaatgtg 214  Q
    ||||||||||| |||| | ||| | ||| ||| |||||| ||| |  |||| |||||||||||| |||| |||||||    
T  13695192 gcaggaaatgtgcaattaattgcaggaaggaagtaacattatacgggaagtctataaaattatctgcaggaaatgtg 13695268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 7159638 - 7159521
Alignment:
Q  36 ttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatat 135  Q
    |||||||  |||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  7159638 ttcctgcggattttgccaagaatttaggtttctaggtaaatgtaataccttcgtgggtaattgtttccttaggattttaggatccgcagaaaaggtatat 7159539  T
Q  136 tcgcaggaaatgttcaat 153  Q
     |||| ||||||| ||||    
T  7159538 ccgcatgaaatgtgcaat 7159521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 211
Target Start/End: Original strand, 9738436 - 9738608
Alignment:
Q  39 ctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcg 138  Q
    ||||||||||||  |||||||||| || | |||||||||| |||||||| | |||||||||||||||||||||||||||||||||  | || ||||| ||    
T  9738436 ctgcaaattttgcgaaggatttaggttcccaggtaaatgtgataccttcgtaggtaattgtttccttaggattttaggatccgcatgataggtatatccg 9738535  T
Q  139 caggaaatgttcaatcatttgtaagaatgaaataacataatatgaaaagtttataaaattatccgcagaaaat 211  Q
    ||| |||| |  ||| ||  ||| ||| ||| |||||| ||||  ||||||||||||||||| ||||||||||    
T  9738536 cagaaaatatgtaattatccgtaggaaggaagtaacattatattgaaagtttataaaattattcgcagaaaat 9738608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 19935158 - 19935112
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19935158 gtaataccttcatgggtaattgtttccttaggattttaggatccgca 19935112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 200
Target Start/End: Complemental strand, 39605911 - 39605758
Alignment:
Q  39 ctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcg 138  Q
    ||||| |||||| ||||||||||| ||| | | |||||| ||||||||| |||||        ||||||||||||||||||||||  |||||||||| ||    
T  39605911 ctgcagattttgccaaggatttaggtttttcgataaatgcaataccttcgtgggt--------ccttaggattttaggatccgcaggaaagatatatccg 39605820  T
Q  139 caggaaatgttcaatcatttgtaagaatgaaataacataatatgaaaagtttataaaattat 200  Q
    |||||||||| |||| ||  | | ||||||| |||||| |||||  |||| |||||||||||    
T  39605819 caggaaatgtgcaattatccgcatgaatgaagtaacattatatgggaagtctataaaattat 39605758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 36320269 - 36320234
Alignment:
Q  89 tgggtaattgtttccttaggattttaggatccgcaa 124  Q
    ||||||||||||||| ||||||||||||||||||||    
T  36320269 tgggtaattgtttccataggattttaggatccgcaa 36320234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 20355675 - 20355725
Alignment:
Q  78 taataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaa 128  Q
    |||||||||  |||||||||||||||| |||||||||||| ||||| ||||    
T  20355675 taatacctttgtgggtaattgtttcctgaggattttaggaaccgcagaaaa 20355725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 16667481 - 16667440
Alignment:
Q  105 taggattttaggatccgcaaaaaagatatattcgcaggaaat 146  Q
    |||||||||||||||||||| ||||||  |||||||||||||    
T  16667481 taggattttaggatccgcaagaaagattaattcgcaggaaat 16667440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 17192655 - 17192614
Alignment:
Q  107 ggattttaggatccgcaaaaaagatatattcgcaggaaatgt 148  Q
    |||||||||||||||||  |||||||||||||||| ||||||    
T  17192655 ggattttaggatccgcaggaaagatatattcgcagaaaatgt 17192614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 214
Target Start/End: Original strand, 34756768 - 34756937
Alignment:
Q  45 attttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcgcaggaa 144  Q
    |||||| ||||||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||| ||||| ||||||||    
T  34756768 attttgccaaggatttaggttcccaggtaaatgtaataccttcgtgggtaattgtttccttaggattttaggatccgcaggaaaggtatatccgcaggaa 34756867  T
Q  145 atgttcaatcatttgtaagaatgaaataacataatatgaaaagtttataaaattatccgcagaaaatgtg 214  Q
    |||| |||| ||  | | ||| ||| |||||| ||||   |||| |||||||||||| | || |||||||    
T  34756868 atgtacaattatccgcaggaaggaagtaacattatataggaagtctataaaattatcggtaggaaatgtg 34756937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 214
Target Start/End: Original strand, 15429255 - 15429424
Alignment:
Q  45 attttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcgcaggaa 144  Q
    |||||||||||||||||| ||   || ||||||||||||||||||||||||||||||||||| |||||||  |||| ||  |||| ||||| ||||||||    
T  15429255 attttgtcaaggatttaggttctcagttaaatgtaataccttcatgggtaattgtttccttaagattttaatatccacaggaaaggtatatccgcaggaa 15429354  T
Q  145 atgttcaatcatttgtaagaatgaaataacataatatgaaaagtttataaaattatccgcagaaaatgtg 214  Q
    |||| |||| ||  | | ||| ||| |||||| ||||   |||| |||||||||||||||||||||||||    
T  15429355 atgtgcaattatcggcaggaaggaagtaacattatataggaagtctataaaattatccgcagaaaatgtg 15429424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 42152580 - 42152507
Alignment:
Q  71 gtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcgcaggaa 144  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  42152580 gtaaatgtaatatcttcgtgggtaattgtttccttaggattttaggatccgtaggaaagatatattcgcaggaa 42152507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 28816759 - 28816836
Alignment:
Q  45 attttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||| ||||||||||| |||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  28816759 attttgccaaggatttaggtttc-aggtaaatgtaatagcttcgtggataattgtttccttaggattttaggatccgca 28816836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 4570535 - 4570453
Alignment:
Q  71 gtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcgcaggaaatgttcaat 153  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||||||| || |||||||||||  |||| |||||| ||||    
T  4570535 gtaaatgtaataccttcgtaggtaattgtttccttaagattttaggatccacagaaaagatatatctgcagaaaatgtgcaat 4570453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 43927231 - 43927339
Alignment:
Q  36 ttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatat 135  Q
    ||||||| ||||||| |||  |||||| |||  |||||||||||||  |||| ||||||||||||| ||||||| ||||| ||||||||||||| || ||    
T  43927231 ttcctgcgaattttgccaaaaatttaggttttcaggtaaatgtaatgtcttcgtgggtaattgttttcttaggactttagaatccgcaaaaaaggtacat 43927330  T
Q  136 tcgcaggaa 144  Q
     ||||||||    
T  43927331 ccgcaggaa 43927339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 12000637 - 12000683
Alignment:
Q  102 ccttaggattttaggatccgcaaaaaagatatattcgcaggaaatgt 148  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||    
T  12000637 ccttaggattttaggatccgcaggaaagatatatccgcaggaaatgt 12000683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 17249432 - 17249478
Alignment:
Q  102 ccttaggattttaggatccgcaaaaaagatatattcgcaggaaatgt 148  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||    
T  17249432 ccttaggattttaggatccgcattaaagatatatccgcaggaaatgt 17249478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 21134992 - 21134948
Alignment:
Q  79 aataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||    
T  21134992 aatacctttgtgggtaatagtttccttaggattttaggatccgca 21134948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 35531900 - 35531948
Alignment:
Q  104 ttaggattttaggatccgcaaaaaagatatattcgcaggaaatgttcaa 152  Q
    ||||||||||||||||||||  |||| ||||| ||||||||||||||||    
T  35531900 ttaggattttaggatccgcaggaaagttatatccgcaggaaatgttcaa 35531948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 304120 - 304080
Alignment:
Q  108 gattttaggatccgcaaaaaagatatattcgcaggaaatgt 148  Q
    ||||||||||||||||  |||||||||| ||||||||||||    
T  304120 gattttaggatccgcaggaaagatatatccgcaggaaatgt 304080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 214
Target Start/End: Original strand, 43447629 - 43447807
Alignment:
Q  36 ttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatat 135  Q
    |||||||| |||||| ||||||||||| || | || || ||||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||    
T  43447629 ttcctgcagattttgccaaggatttagcttcccagatagatgtaatacctttgtgagtaattgtttccttaggattttaggatccgcataaaagatatat 43447728  T
Q  136 tcgcaggaaatgttcaatcatttgtaagaatgaaataacataatatgaaaagtttataaaattatccgcagaaaatgtg 214  Q
     | ||| ||||||  ||| ||  | |  || |||  ||||| ||||||||||| |||||||||||| | ||||||||||    
T  43447729 ccacagaaaatgtaaaattatccgcagaaaggaagcaacattatatgaaaagtctataaaattatcagtagaaaatgtg 43447807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 38239535 - 38239611
Alignment:
Q  45 attttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccg 121  Q
    |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||    
T  38239535 attttgccaaggatttaggtttctaggtaaatgtaataccttcgtgggtaattgttttcttaggatttaaggatccg 38239611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 41199977 - 41199891
Alignment:
Q  36 ttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||||  |||||| ||||||||||| || | |||||||||||||||||||  |||||||||||||||||| |||||||||||||||    
T  41199977 ttcctgcggattttgccaaggatttaggttccaaggtaaatgtaataccttcg-gggtaattgtttccttagaattttaggatccgca 41199891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 3143054 - 3143002
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaag 129  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||| ||||    
T  3143054 gtaatacctttgtgggtaattgttttcttaggattttaggatccgcaagaaag 3143002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 3172897 - 3172849
Alignment:
Q  75 atgtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  3172897 atgtaatacctttatgggtaatcgtttccttaggatttgaggatccgca 3172849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 32234040 - 32234082
Alignment:
Q  79 aataccttcatgggtaattgtttccttaggattttaggatccg 121  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  32234040 aataccatcatgggtaattgtttgcttaggattttaggatccg 32234082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 1319117 - 1319072
Alignment:
Q  78 taataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||||||| |||||||||||||||| |||||||||||| |||||    
T  1319117 taataccttcgtgggtaattgtttcctgaggattttaggaaccgca 1319072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 28715173 - 28715240
Alignment:
Q  78 taataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcgcaggaaa 145  Q
    ||||||||||  |||||||||||||||||||||||||| | |||||  |||| || ||||| ||||||    
T  28715173 taataccttcgcgggtaattgtttccttaggattttagaaaccgcaggaaagttacattcgtaggaaa 28715240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 38239613 - 38239688
Alignment:
Q  140 aggaaatgttcaatcatttgtaagaatgaaataacataatatgaaaagtttataaaattatccgcagaaaatgtgt 215  Q
    ||||||||| |||| ||| | ||||||||| |||||| || ||| |||| ||||||||||||| || |||||||||    
T  38239613 aggaaatgtgcaattattcgcaagaatgaagtaacattatgtgagaagtctataaaattatccacaaaaaatgtgt 38239688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 497462 - 497508
Alignment:
Q  82 accttcatgggtaattgtttccttaggattttaggatccgcaaaaaa 128  Q
    |||||| |||||||||||||||| ||||||||| |||||||| ||||    
T  497462 accttcgtgggtaattgtttcctgaggattttacgatccgcagaaaa 497508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 16640373 - 16640281
Alignment:
Q  36 ttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaa 128  Q
    ||||||| ||||||| || |||||||| || | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  16640373 ttcctgcgaattttgccatggatttaggttcccaggtaaatataataccttcgtgggtaattgtttccttaggattttaggatccgcagaaaa 16640281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 33169369 - 33169282
Alignment:
Q  36 ttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||||  |||||| ||||||||||| || | ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  33169369 ttcctgcggattttgccaaggatttaggttcccaggtaaatgtaataccttcgtgggtaattgtttccttaggatattaggatccgca 33169282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 26686502 - 26686426
Alignment:
Q  47 tttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||| ||||||||||| || | |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  26686502 tttgccaaggatttaggttcccaggtaaatgtaatatcttcgtgggtaattgtttccttaggattttaggatccgca 26686426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 37574970 - 37575078
Alignment:
Q  45 attttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcgcaggaa 144  Q
    ||||||| || |||||||||||  |||||||| |||||||||| || |||| |||||||||| |||||||| |||||||  |||| ||||| ||||| ||    
T  37574970 attttgttaaagatttagattttcaggtaaatataataccttcgtgagtaactgtttccttatgattttagaatccgcatgaaaggtatatccgcagaaa 37575069  T
Q  145 atgttcaat 153  Q
    |||| ||||    
T  37575070 atgtgcaat 37575078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 42817708 - 42817780
Alignment:
Q  142 gaaatgttcaatcatttgtaagaatgaaataacataatatgaaaagtttataaaattatccgcagaaaatgtg 214  Q
    ||||||| |||| ||||| | ||| ||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  42817708 gaaatgtgcaattatttgcaggaaggaagtaacattatatggaaagtttataaaattatccgtagaaaatgtg 42817780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 33070022 - 33069963
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttagga-ttttaggatccgcaaaaaagatatat 135  Q
    |||| |||||||||||| ||||||||||||||| |||||||||||||| ||||| |||||    
T  33070022 gtaaaaccttcatgggttattgtttccttaggatttttaggatccgcagaaaaggtatat 33069963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 11647222 - 11647272
Alignment:
Q  71 gtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccg 121  Q
    |||||| |||||||||| ||||||||||||| |||||||||| ||||||||    
T  11647222 gtaaatataataccttcgtgggtaattgttttcttaggatttgaggatccg 11647272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 49898489 - 49898535
Alignment:
Q  102 ccttaggattttaggatccgcaaaaaagatatattcgcaggaaatgt 148  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||    
T  49898489 ccttaggattttaggatccgcaagaaagatatatccacaggaaatgt 49898535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 18225213 - 18225168
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgc 122  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||||    
T  18225213 gtaataccttcgtgggtaattgtttcgttatgattttaggatccgc 18225168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 4642072 - 4642028
Alignment:
Q  102 ccttaggattttaggatccgcaaaaaagatatattcgcaggaaat 146  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||    
T  4642072 ccttaggattttaggatccgcaggaaagatatatccgcaggaaat 4642028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 9923871 - 9923909
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttag 115  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  9923871 gtaataccttcgtgggtaattgtttcctgaggattttag 9923909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 11815512 - 11815466
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||||| || |||||||||||||||||| ||||||||||| ||||    
T  11815512 gtaataccatcgtgggtaattgtttccttaagattttaggattcgca 11815466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 34459222 - 34459268
Alignment:
Q  102 ccttaggattttaggatccgcaaaaaagatatattcgcaggaaatgt 148  Q
    ||||||||||||||||||||||| ||||||||||  | |||||||||    
T  34459222 ccttaggattttaggatccgcaagaaagatatatctgtaggaaatgt 34459268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 11910160 - 11910200
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttagga 117  Q
    ||||||||||| ||| |||||||||||| ||||||||||||    
T  11910160 gtaataccttcgtggctaattgtttcctgaggattttagga 11910200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 41094004 - 41094044
Alignment:
Q  75 atgtaataccttcatgggtaattgtttccttaggattttag 115  Q
    ||||||||||||| ||||||||||||||||  |||||||||    
T  41094004 atgtaataccttcgtgggtaattgtttcctatggattttag 41094044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 31929079 - 31928971
Alignment:
Q  36 ttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatat 135  Q
    ||||||||||||||| ||||||||||| || | ||||||| |||||||||||  ||||||||||||| |||||||||||||||| |||  |||| |||||    
T  31929079 ttcctgcaaattttgccaaggatttaggttcccaggtaaacgtaataccttcgcgggtaattgtttcgttaggattttaggatctgcaggaaaggtatat 31928980  T
Q  136 tcgcaggaa 144  Q
     ||| ||||    
T  31928979 ccgcgggaa 31928971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 41955359 - 41955430
Alignment:
Q  73 aaatgtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcgcaggaa 144  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||| ||||| ||||||||    
T  41955359 aaatgtaataccttcgtgggtaattgttttcttaggattttaggatccacaagaaaggtatatccgcaggaa 41955430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 6017154 - 6017230
Alignment:
Q  45 attttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccg 121  Q
    |||||| || |||||||| || | |||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  6017154 attttgccatggatttaggttcccaggtcaatgtaataccttcgtgggtaattgtttccttatgattttaggatccg 6017230  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 9438123 - 9438191
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaagatatattcgcaggaaa 145  Q
    |||||| |||| ||||||||||||||| ||||||| |||||||||||  ||||| | ||||||||||||    
T  9438123 gtaatatcttcttgggtaattgtttccctaggattctaggatccgcaggaaagacacattcgcaggaaa 9438191  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 12115989 - 12115943
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||    
T  12115989 gtaacaccttcgtgggtaattgtttccttagaattttaggatccgca 12115943  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 36083584 - 36083630
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    ||||||||||| |||||||||||||||| |||||||||||| |||||    
T  36083584 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgca 36083630  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 15034542 - 15034475
Alignment:
Q  55 ggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||||| || | ||| ||||||| || |||| |||||||||||||||||| ||||||||||||||||    
T  15034542 ggatttaggttcccaggcaaatgta-tatcttcgtgggtaattgtttccttaagattttaggatccgca 15034475  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 5284261 - 5284311
Alignment:
Q  78 taataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaa 128  Q
    |||||||||  |||||||||||||||| |||||||||||| ||||| ||||    
T  5284261 taatacctttgtgggtaattgtttcctgaggattttaggaaccgcagaaaa 5284311  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 9905724 - 9905766
Alignment:
Q  78 taataccttcatgggtaattgtttccttaggattttaggatcc 120  Q
    |||||||||  |||||||||||||||||||||||||| |||||    
T  9905724 taatacctttgtgggtaattgtttccttaggattttaagatcc 9905766  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 24621969 - 24622007
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttag 115  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  24621969 gtaatactttcgtgggtaattgtttccttaggattttag 24622007  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 6017249 - 6017302
Alignment:
Q  161 aagaatgaaataacataatatgaaaagtttataaaattatccgcagaaaatgtg 214  Q
    ||||| ||| |||||| ||||| ||||| ||||||||||||||||| |||||||    
T  6017249 aagaaggaagtaacattatatggaaagtctataaaattatccgcaggaaatgtg 6017302  T

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Target: scaffold0108 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 21040 - 20962
Alignment:
Q  45 attttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||| |||| |||||  |||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||||||    
T  21040 attttgccaagtatttaagtttccaggtaaatgtgataccttcgcgggtaattgtttccttaggattttaggatccgca 20962  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 27297619 - 27297573
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  27297619 gtaataccttcatgggtaattgattcctaaggattttaggatccgca 27297573  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 3355929 - 3355961
Alignment:
Q  91 ggtaattgtttccttaggattttaggatccgca 123  Q
    |||||||||||||||||||||||||||||||||    
T  3355929 ggtaattgtttccttaggattttaggatccgca 3355961  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 7802724 - 7802756
Alignment:
Q  89 tgggtaattgtttccttaggattttaggatccg 121  Q
    |||||||||||||||||||||||||||||||||    
T  7802724 tgggtaattgtttccttaggattttaggatccg 7802756  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 3012426 - 3012469
Alignment:
Q  105 taggattttaggatccgcaaaaaagatatattcgcaggaaatgt 148  Q
    |||||||||||||||||||  |||||||||| ||||||||||||    
T  3012426 taggattttaggatccgcaggaaagatatatccgcaggaaatgt 3012469  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 5582504 - 5582589
Alignment:
Q  36 ttcctgcaaattttgtcaaggatttagatttctaggtaaatgtaataccttcatgggtaattgtttccttaggattttaggatccg 121  Q
    |||||||  |||||| || |||||||| || | || |||||| |||| |||| ||||||||| |||||||||||||||||||||||    
T  5582504 ttcctgcggattttgccagggatttaggttcccagataaatgcaatatcttcgtgggtaattatttccttaggattttaggatccg 5582589  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 9229568 - 9229605
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggatttta 114  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9229568 gtaatagcttcatgggtaattgtttccttaggatttta 9229605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 11761460 - 11761425
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattt 112  Q
    ||||||||||| ||||||||||||||||||||||||    
T  11761460 gtaataccttcgtgggtaattgtttccttaggattt 11761425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 21053650 - 21053696
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    ||||||||||| |||||||||| ||||| | ||||||||||||||||    
T  21053650 gtaataccttcgtgggtaattgattcctgacgattttaggatccgca 21053696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 21054090 - 21054044
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    ||||| |||||||||||||||| ||||| | ||||||||||||||||    
T  21054090 gtaatgccttcatgggtaattgattcctgacgattttaggatccgca 21054044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 21076908 - 21076950
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatc 119  Q
    ||||||||||| |||||||||| ||||| ||||||||||||||    
T  21076908 gtaataccttcgtgggtaattgattcctgaggattttaggatc 21076950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 13480811 - 13480779
Alignment:
Q  91 ggtaattgtttccttaggattttaggatccgca 123  Q
    ||||||||||||||||||||||| |||||||||    
T  13480811 ggtaattgtttccttaggattttcggatccgca 13480779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 1516 - 1557
Alignment:
Q  82 accttcatgggtaattgtttccttaggattttaggatccgca 123  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  1516 accttcgtgggtaattgtttccttaagattttaggatccgca 1557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 28540 - 28488
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaag 129  Q
    ||||||||||| || ||||||| ||||| |||||||||||||||||| |||||    
T  28540 gtaataccttcgtgtgtaattgattcctgaggattttaggatccgcacaaaag 28488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 35446 - 35394
Alignment:
Q  77 gtaataccttcatgggtaattgtttccttaggattttaggatccgcaaaaaag 129  Q
    ||||||||||| || ||||||| ||||| |||||||||||||||||| |||||    
T  35446 gtaataccttcgtgtgtaattgattcctgaggattttaggatccgcacaaaag 35394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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