View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_18 (Length: 425)
Name: NF19782_high_18
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 48 - 408
Target Start/End: Original strand, 3373425 - 3373785
Alignment:
| Q |
48 |
gaagatatttggcatcatctgttcagacacaaaattggaaatcatttaatgaaagtttagacaattgacctgtcttaataagcatcctttgcctgttgaa |
147 |
Q |
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| T |
3373425 |
gaagatatttggcatcatctgttcagacacaaaattggaaatcatttaatgaaagtttagacaattgacctgtcttaataagcatcctttgcctgttgaa |
3373524 |
T |
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| Q |
148 |
acaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattctccactgaacattaggtttgaggctctgaagacatgaagcatag |
247 |
Q |
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| T |
3373525 |
acaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattctccactgaacattaggtttgaggctctgaagacatgaagcatag |
3373624 |
T |
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| Q |
248 |
cacttgagaagtgctcataatctttctcaactttagctcgaatttcatcatgatttagaaacaaacaaaaccgtactgcatgcacatgtataaattttac |
347 |
Q |
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| T |
3373625 |
cacttgagaagtgctcataatctttctcaactttagctcgaatttcatcatgatttagaaaccaacaaaatcgtactgcatgcacatgtataaattttac |
3373724 |
T |
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| Q |
348 |
atggtcaattttgcacacatgtaggtcaaatgataacagatgaaatttaagtcactaaact |
408 |
Q |
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| T |
3373725 |
atggtcaattttgcatacatgtaggtcaaatgataagagatgaaattttagtcactaaact |
3373785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 126 - 334
Target Start/End: Original strand, 3347229 - 3347437
Alignment:
| Q |
126 |
taagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattctccactgaacattaggtttgag |
225 |
Q |
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|||||||||||| | ||||||||| || | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3347229 |
taagcatccttttcttgttgaaacgatcttctcaagtagcttcctagaaaaagttctagcttcctcaagttcatattctccactgaacattaggtttgag |
3347328 |
T |
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| Q |
226 |
gctctgaagacatgaagcatagcacttgagaagtgctcataatctttctcaactttagctcgaatttcatcatgatttagaaacaaacaaaaccgtactg |
325 |
Q |
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||||| || || |||||||| ||||||| ||| |||| |||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
3347329 |
gctctaaacacgtgaagcattgcacttgtgaattgcttataatctttctcaatttcagctcgaatttcatcatcatttagaaaccaacaaaaccgtactg |
3347428 |
T |
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| Q |
326 |
catgcacat |
334 |
Q |
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|||| |||| |
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| T |
3347429 |
catgtacat |
3347437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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