View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_19 (Length: 425)
Name: NF19782_high_19
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 13921515 - 13921909
Alignment:
| Q |
12 |
tagcaaaggcaatatactcgtctaattaaaaaagcacatttagggcaatatacatgtcttagcaaaggcaatatattcagataataaattgtcaacgcct |
111 |
Q |
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| T |
13921515 |
tagcaaaggcaatatactcgtctaattaaaaaagcacatttagggcaatatacatgtcttagcaaaggcaatatattcagataataaattgtcaacgcct |
13921614 |
T |
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| Q |
112 |
aaaaaattgtaatcgaagccctaattctatcgcaaccccccaactaattatataaccctcttccaatctttccctttaggatgaatcaatacatgtcaac |
211 |
Q |
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| T |
13921615 |
aaaaaattgtaatcgaagccctaattctatcgcaaccccccaactaattatataaccctcttccaatctttccctttaggatgaatcaatacatgtcaac |
13921714 |
T |
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| Q |
212 |
cctcaattttcacacaagnnnnnnnccaacttaacaaatagaaacatgacagtagctcttataattagcaacatttgcatttaagtgattccaatcatat |
311 |
Q |
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| T |
13921715 |
cctcaattttcacacaagtttttttccaacttaacaaatagaaacatgacagtagctcttataattagcaacatttgcatttaagtgattccaatcatat |
13921814 |
T |
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| Q |
312 |
gaagccaaaagcagaatggtatatcgacttacggaatagaatggacatgacaagattgtgttgcattgaagcgtcttcaattttctgtttgtaat |
406 |
Q |
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| T |
13921815 |
gaagccaaaagcagaatggtatatcgacttacggaatagaatggacatgacaagattgtgttgcattgaagcgtcttcaattttctgtttgtaat |
13921909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 14315899 - 14315807
Alignment:
| Q |
314 |
agccaaaagcagaatggtatatcgacttacggaatagaatggacatgacaagattgtgttgcattgaagcgtcttcaattttctgtttgtaat |
406 |
Q |
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| T |
14315899 |
agccaaaagcagaatggtatatggacttacggaatacaatggacagaacaggattgtgttgcgtcgaagcgccttcaattttctgtttgtaat |
14315807 |
T |
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