View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_26 (Length: 386)

Name: NF19782_high_26
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_26
NF19782_high_26
[»] chr7 (10 HSPs)
chr7 (256-385)||(6102842-6102979)
chr7 (182-224)||(42513061-42513103)
chr7 (305-384)||(4257481-4257560)
chr7 (182-220)||(30452810-30452848)
chr7 (183-228)||(4257365-4257410)
chr7 (183-220)||(30456419-30456456)
chr7 (183-228)||(41712397-41712442)
chr7 (256-305)||(42513135-42513184)
chr7 (183-224)||(49017236-49017277)
chr7 (183-228)||(6103008-6103053)
[»] chr4 (8 HSPs)
chr4 (256-382)||(24733552-24733693)
chr4 (263-384)||(12637953-12638082)
chr4 (182-225)||(36050771-36050814)
chr4 (183-225)||(36054030-36054072)
chr4 (182-220)||(55322333-55322371)
chr4 (183-220)||(27387733-27387770)
chr4 (185-228)||(12638115-12638158)
chr4 (183-216)||(10129632-10129665)
[»] chr5 (4 HSPs)
chr5 (183-226)||(24108805-24108848)
chr5 (256-305)||(24108726-24108775)
chr5 (256-305)||(8123556-8123605)
chr5 (183-220)||(41709613-41709650)
[»] chr2 (5 HSPs)
chr2 (182-228)||(31211918-31211964)
chr2 (194-228)||(31193282-31193316)
chr2 (194-228)||(40400920-40400954)
chr2 (318-384)||(45327547-45327613)
chr2 (199-228)||(45327420-45327449)
[»] chr6 (10 HSPs)
chr6 (256-305)||(4834747-4834796)
chr6 (183-224)||(7426695-7426736)
chr6 (181-224)||(33242957-33243000)
chr6 (182-224)||(7422756-7422798)
chr6 (182-220)||(13886654-13886692)
chr6 (183-220)||(4834832-4834869)
chr6 (256-305)||(7415667-7415716)
chr6 (256-305)||(7422675-7422724)
chr6 (183-216)||(16389217-16389250)
chr6 (256-305)||(33242876-33242925)
[»] chr8 (3 HSPs)
chr8 (182-220)||(44762080-44762118)
chr8 (259-305)||(14276637-14276684)
chr8 (183-220)||(44765387-44765424)
[»] chr3 (7 HSPs)
chr3 (182-224)||(19798050-19798092)
chr3 (182-224)||(19798295-19798337)
chr3 (256-305)||(36326518-36326567)
chr3 (183-220)||(36326603-36326640)
chr3 (182-220)||(1830902-1830940)
chr3 (182-224)||(18319509-18319551)
chr3 (183-220)||(14029440-14029477)
[»] chr1 (6 HSPs)
chr1 (318-384)||(16544325-16544391)
chr1 (182-228)||(18583885-18583931)
chr1 (259-305)||(6392797-6392844)
chr1 (182-220)||(23405474-23405512)
chr1 (318-384)||(23405618-23405684)
chr1 (256-305)||(18583959-18584008)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 6102979 - 6102842
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat--------ggatgctcattataagataactacaatggctacataatagtg 347  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||        ||||| | ||||||||||||||| |||||||||||||||| |    
T  6102979 ttcattatatttttcattgattctaatcatgaaagatacaatgcttatataggtttggggatgtttattataagataactaaaatggctacataatagcg 6102880  T
Q  348 cttctaactagcaaactaatagaatatgcctaaaagac 385  Q
    ||||| | || | | |||||||||||||||||||||||    
T  6102879 cttcttagtaactacctaatagaatatgcctaaaagac 6102842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 42513061 - 42513103
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaaatta 224  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  42513061 atgatacgacccaattcgagtagggatcacactccagaaatta 42513103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 4257481 - 4257560
Alignment:
Q  305 tggatgctcattataagataactacaatggctacataatagtgcttctaactagcaaactaatagaatatgcctaaaaga 384  Q
    ||||| |||||||||||||||||||||  |||||| ||||| |||||| | || | |||||||||||||||  |||||||    
T  4257481 tggatcctcattataagataactacaacagctacacaatagcgcttcttagtaactaactaatagaatatgtttaaaaga 4257560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 30452848 - 30452810
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaa 220  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30452848 atgatacgacccaattcgagtagggatcacactccagaa 30452810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 4257365 - 4257410
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaaattaagag 228  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||    
T  4257365 tgatacgacccaatatgagtagggatcacactccagaaattaagag 4257410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 30456456 - 30456419
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaa 220  Q
    |||||||||| |||||||||||||||||||||||||||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaa 30456419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 41712442 - 41712397
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaaattaagag 228  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  41712442 tgatacgacccaattcgagtaaggatcacactccaaaaattaagag 41712397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 42513135 - 42513184
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 305  Q
    |||||||||||||||||||||||| || || || ||||||||||||||||    
T  42513135 ttcattatatttttcattgattctcataataaagcatacaatgcttatat 42513184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 49017277 - 49017236
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaaatta 224  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  49017277 tgatacgacctaattcgaatagggatcacactccataaatta 49017236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 6103053 - 6103008
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaaattaagag 228  Q
    |||||| ||| |||||||||||| ||||||||||| ||||||||||    
T  6103053 tgatacaacccaattcgagtaggaatcacactccataaattaagag 6103008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 382
Target Start/End: Complemental strand, 24733693 - 24733552
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat--------ggatgctcatta-------taagataactacaatggctacat 340  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||        ||||||||||||       |||||||||||||||||||||||    
T  24733693 ttcattatatttttcattccttctaatcatgaaacatacaatgcttatataggcatgtggatgctcattagtcattataagataactacaatggctacat 24733594  T
Q  341 aatagtgcttctaactagcaaactaatagaatatgcctaaaa 382  Q
    ||||| |||||| | || | ||||||||||||| ||||||||    
T  24733593 aatagcgcttcttagtaactaactaatagaataggcctaaaa 24733552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 384
Target Start/End: Complemental strand, 12638082 - 12637953
Alignment:
Q  263 tatttttcattgattctaatcatgaaacatacaatgcttatat--------ggatgctcattataagataactacaatggctacataatagtgcttctaa 354  Q
    ||||||||||||||| | |||||||  |||||||||||| |||        |||| ||||||||||||||||||||| ||||||| ||||| |||||| |    
T  12638082 tatttttcattgattattatcatgaggcatacaatgcttttataagcttgtggatcctcattataagataactacaacggctacacaatagcgcttctta 12637983  T
Q  355 ctagcaaactaatagaatatgcctaaaaga 384  Q
     |  | |||||||||||||||| |||||||    
T  12637982 gtcactaactaatagaatatgcttaaaaga 12637953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 36050814 - 36050771
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaaattaa 225  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  36050814 atgatacgacccaattcgagtagggatcacactccaaaaattaa 36050771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 36054072 - 36054030
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaaattaa 225  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaa 36054030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 55322333 - 55322371
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaa 220  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  55322333 atgatacgacccaattcgagtagggatcacactccagaa 55322371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 27387770 - 27387733
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaa 220  Q
    |||||||||| |||||||||||||||||||||||||||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaa 27387733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 12638158 - 12638115
Alignment:
Q  185 atacgacctaattcgagtagggatcacactccagaaattaagag 228  Q
    |||||||| |||||||||||| ||| ||||||||||||||||||    
T  12638158 atacgacccaattcgagtaggtatcgcactccagaaattaagag 12638115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 10129632 - 10129665
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactcc 216  Q
    |||||||||| |||||||||||||||||||||||    
T  10129632 tgatacgacccaattcgagtagggatcacactcc 10129665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 24108848 - 24108805
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaaattaag 226  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaattaag 24108805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 24108775 - 24108726
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 305  Q
    ||||||||||||||||||| |||||||||| | |||||||||||||||||    
T  24108775 ttcattatatttttcattggttctaatcataagacatacaatgcttatat 24108726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 8123605 - 8123556
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 305  Q
    |||||||||||||||||||||||| || || || ||||||||||||||||    
T  8123605 ttcattatatttttcattgattctcataataaagcatacaatgcttatat 8123556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 41709650 - 41709613
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaa 220  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  41709650 tgatacgacccaattcgagtagagatcacactccagaa 41709613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 31211964 - 31211918
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaaattaagag 228  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||    
T  31211964 atgatacgatccaattcgagtagggatcacactccagaaattaagag 31211918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 31193316 - 31193282
Alignment:
Q  194 aattcgagtagggatcacactccagaaattaagag 228  Q
    |||||||||||||||||||||| ||||||||||||    
T  31193316 aattcgagtagggatcacactctagaaattaagag 31193282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 40400920 - 40400954
Alignment:
Q  194 aattcgagtagggatcacactccagaaattaagag 228  Q
    |||||||||||||||||||||||||||||| ||||    
T  40400920 aattcgagtagggatcacactccagaaatttagag 40400954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 45327547 - 45327613
Alignment:
Q  318 taagataactacaatggctacataatagtgcttctaactagcaaactaatagaatatgcctaaaaga 384  Q
    |||||||||||||| ||||||| ||||||  | || | || | ||||||||||||||||||||||||    
T  45327547 taagataactacaacggctacacaatagtattgcttagtaactaactaatagaatatgcctaaaaga 45327613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 45327420 - 45327449
Alignment:
Q  199 gagtagggatcacactccagaaattaagag 228  Q
    ||||||||||||||||||||||||||||||    
T  45327420 gagtagggatcacactccagaaattaagag 45327449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 4834796 - 4834747
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 305  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  4834796 ttcattatatttttcattgattctaataatgaggcatacaatgcttatat 4834747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 7426736 - 7426695
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaaatta 224  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaatta 7426695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 33243000 - 33242957
Alignment:
Q  181 gatgatacgacctaattcgagtagggatcacactccagaaatta 224  Q
    |||||||||||| ||||||||||| |||||||||||||||||||    
T  33243000 gatgatacgacccaattcgagtagagatcacactccagaaatta 33242957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 7422798 - 7422756
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaaatta 224  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  7422798 atgatacgacccaattcgagtagggatcacactcaagaaatta 7422756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 13886692 - 13886654
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaa 220  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  13886692 atgatacgacccaatttgagtagggatcacactccagaa 13886654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 4834869 - 4834832
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaa 220  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  4834869 tgatacgacccaatttgagtagggatcacactccagaa 4834832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 7415716 - 7415667
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 305  Q
    |||||||||||||||||||||||| || || |  ||||||||||||||||    
T  7415716 ttcattatatttttcattgattctcataataaggcatacaatgcttatat 7415667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 7422724 - 7422675
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 305  Q
    |||||||||||||||||||||||| || || |  ||||||||||||||||    
T  7422724 ttcattatatttttcattgattctcataataaggcatacaatgcttatat 7422675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 16389217 - 16389250
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactcc 216  Q
    |||||||||| |||||||||||||||||||||||    
T  16389217 tgatacgacccaattcgagtagggatcacactcc 16389250  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 33242925 - 33242876
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 305  Q
    |||||||||||||||||||||||| || || |  ||||||||||||||||    
T  33242925 ttcattatatttttcattgattctcataataaggcatacaatgcttatat 33242876  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 44762118 - 44762080
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaa 220  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  44762118 atgatacgacccaattcgagtagggatcacactccagaa 44762080  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 14276637 - 14276684
Alignment:
Q  259 attatatttttcattgattctaatcatgaaaca-tacaatgcttatat 305  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  14276637 attatatttttcattgattttaatcatgaagcattacaatgcttatat 14276684  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 44765424 - 44765387
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaa 220  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaa 44765387  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 19798050 - 19798092
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaaatta 224  Q
    |||||||||||  ||||||||||||||||||||||||||||||    
T  19798050 atgatacgacccgattcgagtagggatcacactccagaaatta 19798092  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 19798295 - 19798337
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaaatta 224  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  19798295 atgatacgacccaattcgagtagggatcagactccagaaatta 19798337  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 36326567 - 36326518
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 305  Q
    |||||||||||||||||||||||| || || || ||||||||||||||||    
T  36326567 ttcattatatttttcattgattctcataataaagcatacaatgcttatat 36326518  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 36326640 - 36326603
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaa 220  Q
    |||||||||| |||||||||||||||||||||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaa 36326603  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 1830940 - 1830902
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaa 220  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  1830940 atgatacgacccaattcaagtagggatcacactccagaa 1830902  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 18319551 - 18319509
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaaatta 224  Q
    |||||||||||  ||||||||||||||||||||| ||||||||    
T  18319551 atgatacgacccgattcgagtagggatcacactctagaaatta 18319509  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 14029477 - 14029440
Alignment:
Q  183 tgatacgacctaattcgagtagggatcacactccagaa 220  Q
    ||||||| || |||||||||||||||||||||||||||    
T  14029477 tgatacggcccaattcgagtagggatcacactccagaa 14029440  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 16544391 - 16544325
Alignment:
Q  318 taagataactacaatggctacataatagtgcttctaactagcaaactaatagaatatgcctaaaaga 384  Q
    |||||||||||||||||| ||||||||| |||||| | || | ||||| |||| |||||||||||||    
T  16544391 taagataactacaatggccacataatagcgcttcttagtaactaactagtagagtatgcctaaaaga 16544325  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 18583885 - 18583931
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaaattaagag 228  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  18583885 atgatacgacccaattcgagtagagattacactccagaaattaagag 18583931  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 6392797 - 6392844
Alignment:
Q  259 attatatttttcattgattctaatcatgaaac-atacaatgcttatat 305  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||    
T  6392797 attatatttttcattgattttaatcatgagacaatacaatgcttatat 6392844  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 23405474 - 23405512
Alignment:
Q  182 atgatacgacctaattcgagtagggatcacactccagaa 220  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  23405474 atgatacgacccaattcaagtagggatcacactccagaa 23405512  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 23405618 - 23405684
Alignment:
Q  318 taagataactacaatggctacataatagtgcttctaactagcaaactaatagaatatgcctaaaaga 384  Q
    |||||||||||||| ||||||| ||||||  | || | || | ||||||||||||||||||||||||    
T  23405618 taagataactacaacggctacacaatagtattgcttagtaactaactaatagaatatgcctaaaaga 23405684  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 18583959 - 18584008
Alignment:
Q  256 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 305  Q
    |||| ||||||||||||||||||| || || || ||||||||||||||||    
T  18583959 ttcagtatatttttcattgattctcataataaagcatacaatgcttatat 18584008  T

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