View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_27 (Length: 380)

Name: NF19782_high_27
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_27
NF19782_high_27
[»] chr4 (6 HSPs)
chr4 (9-361)||(47596026-47596378)
chr4 (31-71)||(17714698-17714738)
chr4 (31-96)||(10185224-10185289)
chr4 (31-71)||(4243417-4243457)
chr4 (31-71)||(33844007-33844047)
chr4 (31-95)||(41751263-41751327)
[»] chr3 (5 HSPs)
chr3 (216-312)||(36432848-36432944)
chr3 (216-312)||(47749740-47749836)
chr3 (31-112)||(51285600-51285681)
chr3 (43-96)||(584783-584836)
chr3 (119-151)||(26800643-26800675)
[»] chr7 (2 HSPs)
chr7 (216-312)||(15683432-15683528)
chr7 (102-149)||(39005749-39005796)
[»] chr8 (2 HSPs)
chr8 (28-95)||(3206084-3206151)
chr8 (77-168)||(10368041-10368132)
[»] chr2 (3 HSPs)
chr2 (32-73)||(40704610-40704651)
chr2 (119-168)||(6948474-6948523)
chr2 (31-112)||(44439284-44439365)
[»] chr1 (5 HSPs)
chr1 (31-71)||(17284126-17284166)
chr1 (44-108)||(52263625-52263689)
chr1 (31-96)||(1514373-1514438)
chr1 (36-73)||(43959630-43959667)
chr1 (31-71)||(10324953-10324993)
[»] chr5 (3 HSPs)
chr5 (31-73)||(24306109-24306151)
chr5 (31-73)||(24367165-24367207)
chr5 (34-114)||(35073410-35073490)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 47596378 - 47596026
Alignment:
Q  9 gattatacttgaaacttatagtttttgattataaaattgatttttgcactcaaatttattgtttagtccatttttacataaatgtatcaaatcataaatt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |     
T  47596378 gattctacttgaaacttatagtttttgattataaaattgatttttacactcaaatttattgtttagcccatttttacataaatctatcaaatcataattc 47596279  T
Q  109 acttgaggtccaactcaattttaatcaaaattaattttacatatacaattcaatcaaaataatttgttctcattgcaaaaggaaaatgcttcttgctacg 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  47596278 acttgcggtccaactcaattttaatcaaaattaattttacatatacaattcaatcaaaatcatttgttctcgttgcaaaaggaaaatgcttcttgctacg 47596179  T
Q  209 aaatgccattccaccaagtacaaaattaagtgtcatacactttttgattaaagaacacgtatacattcttagttttagtgggcaatattgatcgtggtat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47596178 aaatgccattccaccaagtacaaaattaagtgtcatacactttttgattaaagaacacgtatacattcttagttttagtgggcaacattgatcgtggtat 47596079  T
Q  309 atagaaaaactccattgcaaaaccaaacataaaataagacaatacgtacattt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47596078 atagaaaaactccattgcaaaaccaaacataaaataagacaatacgtacattt 47596026  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 17714698 - 17714738
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgtt 71  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  17714698 ttttgattatagaattgatttttgcactcaaatttattgtt 17714738  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 10185224 - 10185289
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgtttagtccatttttacataaatgtatc 96  Q
    |||||||| |||||||||| ||| |||||||||||||||||||   || |||||||| ||||||||    
T  10185224 ttttgattctaaaattgatctttacactcaaatttattgtttaactcacttttacattaatgtatc 10185289  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 4243417 - 4243457
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgtt 71  Q
    |||||||| || ||||||||||| |||||||||||||||||    
T  4243417 ttttgattctagaattgatttttacactcaaatttattgtt 4243457  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 33844007 - 33844047
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgtt 71  Q
    |||||||| |||||||||||||  |||||||||||||||||    
T  33844007 ttttgattctaaaattgattttaacactcaaatttattgtt 33844047  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 41751327 - 41751263
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgtttagtccatttttacataaatgtat 95  Q
    |||||||| || |||||||||||  ||| |||||||||||||| | || |||||||| |||||||    
T  41751327 ttttgattctagaattgatttttaaacttaaatttattgtttaattcagttttacatgaatgtat 41751263  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 36432848 - 36432944
Alignment:
Q  216 attccaccaagtacaaaattaagtgtcatacactttttgattaaagaacacgtatacattcttagttttagtgggcaatattgatcgtggtatatag 312  Q
    ||||||||||||||  |||||| |||||| |||| ||| |||||||||||||| ||||||||||||||| || |||||| || ||||||||||||||    
T  36432848 attccaccaagtacctaattaattgtcattcactatttaattaaagaacacgtgtacattcttagttttcgtaggcaattttaatcgtggtatatag 36432944  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 47749836 - 47749740
Alignment:
Q  216 attccaccaagtacaaaattaagtgtcatacactttttgattaaagaacacgtatacattcttagttttagtgggcaatattgatcgtggtatatag 312  Q
    ||||||||||||||  |||||| || ||| |||| ||| |||||||||||||| ||||||||||||||| || |||||| || ||||||||||||||    
T  47749836 attccaccaagtacctaattaattgccattcactatttaattaaagaacacgtgtacattcttagttttcgtaggcaattttaatcgtggtatatag 47749740  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 51285600 - 51285681
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgtttagtccatttttacataaatgtatcaaatcataaattactt 112  Q
    |||||||| || ||||||||||||||||||||||| |||||||  ||  |||||||| |||||||| || ||| ||||||||    
T  51285600 ttttgattctagaattgatttttgcactcaaatttgttgtttaacccgcttttacatgaatgtatccaagcatgaattactt 51285681  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 584836 - 584783
Alignment:
Q  43 aattgatttttgcactcaaatttattgtttagtccatttttacataaatgtatc 96  Q
    |||||||||||||| ||||||| |||||||||  || |||||||||||||||||    
T  584836 aattgatttttgcagtcaaattaattgtttagctcacttttacataaatgtatc 584783  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 26800643 - 26800675
Alignment:
Q  119 caactcaattttaatcaaaattaattttacata 151  Q
    ||||||| |||||||||||||||||||||||||    
T  26800643 caactcatttttaatcaaaattaattttacata 26800675  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 15683432 - 15683528
Alignment:
Q  216 attccaccaagtacaaaattaagtgtcatacactttttgattaaagaacacgtatacattcttagttttagtgggcaatattgatcgtggtatatag 312  Q
    ||||||||||||||  |||||| |  ||| |||| ||| |||||||||||||| | |||||||||||||  | |||||| || ||||||||||||||    
T  15683432 attccaccaagtacctaattaattaccattcactatttaattaaagaacacgtgtccattcttagttttcataggcaattttaatcgtggtatatag 15683528  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 39005749 - 39005796
Alignment:
Q  102 ataaattacttgaggtccaactcaattttaatcaaaattaattttaca 149  Q
    |||||||||||||| | |||||||||||||| |||||| |||||||||    
T  39005749 ataaattacttgagattcaactcaattttaaccaaaatcaattttaca 39005796  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 3206084 - 3206151
Alignment:
Q  28 agtttttgattataaaattgatttttgcactcaaatttattgtttagtccatttttacataaatgtat 95  Q
    ||||||| |||||||||||||| ||| |||| |||||||||||||| |  ||||||| ||||||||||    
T  3206084 agttttttattataaaattgatctttacacttaaatttattgtttaatttatttttatataaatgtat 3206151  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 10368041 - 10368132
Alignment:
Q  77 catttttacataaatgtatcaaatcataaattacttgaggtccaactcaattttaatcaaaattaattttacatatacaattcaatcaaaat 168  Q
    ||||||||||| |||||||| || || |||| |||| |  | ||||||| ||||| ||||||| ||||||||| | |||||||| |||||||    
T  10368041 catttttacatgaatgtatctaaacacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaat 10368132  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 40704610 - 40704651
Alignment:
Q  32 tttgattataaaattgatttttgcactcaaatttattgttta 73  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  40704610 tttgattgtaaaattgatctttgcactcaaatttattgttta 40704651  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 6948523 - 6948474
Alignment:
Q  119 caactcaattttaatcaaaattaattttacatatacaattcaatcaaaat 168  Q
    ||||||||||| ||||||||| |||||||||||  ||||||| |||||||    
T  6948523 caactcaatttcaatcaaaatcaattttacataaccaattcattcaaaat 6948474  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 44439284 - 44439365
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgtttagtccatttttacataaatgtatcaaatcataaattactt 112  Q
    |||||||| |||||||||||||  ||||||||||||||||| |   || |||||||||||  |||| || ||||||| ||||    
T  44439284 ttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaatcactt 44439365  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 17284126 - 17284166
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgtt 71  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  17284126 ttttgattctaaaattgatttttacactcaaatttattgtt 17284166  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 52263689 - 52263625
Alignment:
Q  44 attgatttttgcactcaaatttattgtttagtccatttttacataaatgtatcaaatcataaatt 108  Q
    |||||||||| |||||||||||||||||||   || |||||||| |||||||| || ||||||||    
T  52263689 attgatttttacactcaaatttattgtttaactcagttttacattaatgtatccaaacataaatt 52263625  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 1514373 - 1514438
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgtttagtccatttttacataaatgtatc 96  Q
    |||| |||||| ||||||||||| ||| ||||||||||||| |   ||||||||||| ||||||||    
T  1514373 tttttattatataattgatttttacacacaaatttattgttcaactcatttttacatgaatgtatc 1514438  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 43959630 - 43959667
Alignment:
Q  36 attataaaattgatttttgcactcaaatttattgttta 73  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  43959630 attataaaattgatttttagactcaaatttattgttta 43959667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 10324993 - 10324953
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgtt 71  Q
    |||||||| || ||||||||||| |||||||||||||||||    
T  10324993 ttttgattctataattgatttttacactcaaatttattgtt 10324953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 24306151 - 24306109
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgttta 73  Q
    |||||||| || ||||||||||| |||||||||||||||||||    
T  24306151 ttttgattctataattgatttttacactcaaatttattgttta 24306109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 24367165 - 24367207
Alignment:
Q  31 ttttgattataaaattgatttttgcactcaaatttattgttta 73  Q
    |||||||| || ||||||||||| |||||||||||||||||||    
T  24367165 ttttgattctataattgatttttacactcaaatttattgttta 24367207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 35073490 - 35073410
Alignment:
Q  34 tgattataaaattgatttttgcactcaaatttattgtttagtccatttttacataaatgtatcaaatcataaattacttga 114  Q
    |||||||| ||||||||||  ||||||||||||  |||||   || ||||| |||||||||| ||| ||||||||| ||||    
T  35073490 tgattatagaattgattttgacactcaaatttaaagtttaactcacttttatataaatgtataaaaacataaattatttga 35073410  T

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