View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_30 (Length: 365)
Name: NF19782_high_30
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 54535 - 54202
Alignment:
| Q |
16 |
atgatgcgatgcttgtgcgtatgaaacataatgaaagctcaactaaaaagtcaacaagaaattatgcacatatgtttctgtctctgcattgatagattaa |
115 |
Q |
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| T |
54535 |
atgatgcgatgcttgtgcgtatgaaacataatgaaagctcaactaaaaagtcaacaagaaattatgcacatatgtttctgtctctgcattgatagattaa |
54436 |
T |
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| Q |
116 |
taaagtacctttctttttcttttgggtgaccagaggatttctttctgcatcattaagttcaccttttaaaaaattttgcacttnnnnnnnncaaacatgt |
215 |
Q |
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| T |
54435 |
taaagtacctttctttttcttttgggtgaccagaggatttc-ttctgcatcattaagttcaccttttaaaaaattttgcacttaaaaaaaacaaacatgt |
54337 |
T |
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| Q |
216 |
gaaaaaatttgttcta-tttaacaaccatgcacctttgttttgatgagacatgtctcaaacatgttttactgttgaagccaggggccctgcaattgcaaa |
314 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54336 |
gaaaaaatttgttctattttaacaatcatgcacctttgttttgatgagacatgtctcaaacatgttttactgttgaagccaggggccctgcaattgcaaa |
54237 |
T |
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| Q |
315 |
accatttcaaaattgtcatcctccaaagacaatat |
349 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
54236 |
accatttcaaaattgtcatcctacaaagacaatat |
54202 |
T |
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