View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_32 (Length: 355)

Name: NF19782_high_32
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_32
NF19782_high_32
[»] chr2 (6 HSPs)
chr2 (1-331)||(7195268-7195601)
chr2 (145-210)||(10451156-10451221)
chr2 (151-208)||(37458303-37458360)
chr2 (11-104)||(27561494-27561587)
chr2 (11-104)||(37457932-37458025)
chr2 (11-66)||(22144531-22144586)
[»] scaffold0238 (1 HSPs)
scaffold0238 (135-210)||(6197-6273)
[»] chr3 (4 HSPs)
chr3 (135-210)||(30998633-30998709)
chr3 (140-206)||(41052966-41053032)
chr3 (11-66)||(38510100-38510155)
chr3 (12-66)||(53556128-53556182)
[»] chr7 (3 HSPs)
chr7 (145-206)||(21887338-21887399)
chr7 (156-212)||(32663470-32663526)
chr7 (140-206)||(37478633-37478699)
[»] chr1 (2 HSPs)
chr1 (135-210)||(12605689-12605765)
chr1 (140-206)||(52038226-52038292)
[»] chr8 (1 HSPs)
chr8 (251-316)||(35644368-35644433)
[»] chr4 (1 HSPs)
chr4 (11-104)||(5742314-5742407)
[»] chr5 (1 HSPs)
chr5 (140-206)||(1685885-1685951)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 7195268 - 7195601
Alignment:
Q  1 atgtttaaaattgcactacagggtcctataaaaggtttgttgcaaatatggacttggtgacatctaaagcggttggttagtggtaaattattttttctgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7195268 atgtttaaaattgcactacagggtcctataaaaggtttgttgcaaatatggacttggtgacatctaaagcgattggttagtggtaaattattttttctgt 7195367  T
Q  101 agttttaacagcatgtcatggcttcattttgtatagttcttctc--tttgtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattaga 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7195368 agttttaacagcatgtcatggcttcattttgtatagttcttctctttttgtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattaga 7195467  T
Q  199 tacatttcaagtttttatgagcattgaatatgactggtgaagttcccattttc-ttgcaaagcctcaaacttgcatgagtatgagtggtgaaatagtaag 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7195468 tacatttcaagtttttatgagcattgaatatgactggtgaagttcccattttctttgcaaagcctcaaacttgcatgagtatgagtggtgaaatagtaag 7195567  T
Q  298 gaattaaaatattctacttcctagtacaagtttt 331  Q
    ||||||||||||||||||||||||||||||||||    
T  7195568 gaattaaaatattctacttcctagtacaagtttt 7195601  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 10451156 - 10451221
Alignment:
Q  145 tttgtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttcaagt 210  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||| |||| |||||| |||||||||    
T  10451156 tttgtctctctcactcatacaataaaaaggaaaactatgaccatgtgtaatagataaatttcaagt 10451221  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 37458303 - 37458360
Alignment:
Q  151 tctctcactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttcaa 208  Q
    |||| |||||||||||||||||| |||||| ||||||| ||||||||||| |||||||    
T  37458303 tctcccactcatacaataaaaagaaaaaccttgaccatgtgtattagataaatttcaa 37458360  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 27561494 - 27561587
Alignment:
Q  11 ttgcactacagggtcctataaaaggtttgttgcaaatatggacttggtgacatctaaagcggttggttagtggtaaattattttttctgtagtt 104  Q
    ||||| |||| |||||||||||| || || |||||||||||||||| ||||||||| |  | ||| ||| |||||||||| | ||| |||||||    
T  27561494 ttgcagtacaaggtcctataaaaagtctgatgcaaatatggacttgatgacatctacatggattgattactggtaaattaatctttttgtagtt 27561587  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 37457932 - 37458025
Alignment:
Q  11 ttgcactacagggtcctataaaaggtttgttgcaaatatggacttggtgacatctaaagcggttggttagtggtaaattattttttctgtagtt 104  Q
    ||||| |||| |||||||||||| || || |||||||||||||||| ||||||||| |  | ||| ||| |||||||||| | ||| |||||||    
T  37457932 ttgcagtacaaggtcctataaaaagtctgctgcaaatatggacttgatgacatctacatggattgattattggtaaattaatctttttgtagtt 37458025  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 22144586 - 22144531
Alignment:
Q  11 ttgcactacagggtcctataaaaggtttgttgcaaatatggacttggtgacatcta 66  Q
    ||||| |||| |||||||||||||||||| ||| ||| |||||||| |||||||||    
T  22144586 ttgcagtacaaggtcctataaaaggtttgctgctaatctggacttgatgacatcta 22144531  T

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Target: scaffold0238 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 6197 - 6273
Alignment:
Q  135 agttcttctcttt-gtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttcaagt 210  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| |||| |||||| |||||||||    
T  6197 agttcttctcttttgtctctctcactcatacaataaaaaggaaaactatgaccatgtgtaatagataaatttcaagt 6273  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 30998709 - 30998633
Alignment:
Q  135 agttcttctcttt-gtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttcaagt 210  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| |||| |||||| |||||||||    
T  30998709 agttcttctcttttgtctctctcactcatacaataaaaaggaaaactatgaccatgtgtaatagataaatttcaagt 30998633  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 41052966 - 41053032
Alignment:
Q  140 ttctctttgtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttc 206  Q
    |||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||    
T  41052966 ttctttttgtctctctcacacatacaataaaaagaaaaaccatgaccatgtgtattagatagatttc 41053032  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 38510155 - 38510100
Alignment:
Q  11 ttgcactacagggtcctataaaaggtttgttgcaaatatggacttggtgacatcta 66  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||| |||||||||    
T  38510155 ttgcagtacaaggtcctataaaaggtttgctgcaaatatggacttgatgacatcta 38510100  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 53556182 - 53556128
Alignment:
Q  12 tgcactacagggtcctataaaaggtttgttgcaaatatggacttggtgacatcta 66  Q
    |||| |||| |||||||||||||||||| |||||||||||||||| |||||||||    
T  53556182 tgcagtacaaggtcctataaaaggtttgctgcaaatatggacttgatgacatcta 53556128  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 21887399 - 21887338
Alignment:
Q  145 tttgtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttc 206  Q
    ||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||    
T  21887399 tttgtctctctcacacatacaataaaaagaaaaaccatgaccatgtgtattagataaatttc 21887338  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 32663470 - 32663526
Alignment:
Q  156 cactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttcaagttt 212  Q
    |||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||    
T  32663470 cactcatacaataaaaagaaaaaccatgaccatgtgtattagacaaatttcaagttt 32663526  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 37478699 - 37478633
Alignment:
Q  140 ttctctttgtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttc 206  Q
    |||| ||||| |||||||| ||||||||| |||| |||||||||||||| ||||||||||| |||||    
T  37478699 ttctttttgtctctctcacacatacaatacaaagaaaaaccatgaccatgtgtattagataaatttc 37478633  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 12605765 - 12605689
Alignment:
Q  135 agttcttctcttt-gtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttcaagt 210  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| |||| ||||||  ||||||||    
T  12605765 agttcttctcttttgtctctctcactcatacaataaaaaggaaaactatgaccatgtgtaatagataactttcaagt 12605689  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 52038292 - 52038226
Alignment:
Q  140 ttctctttgtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttc 206  Q
    |||| ||||| ||||||||  |||||||  |||| |||||||||||||| ||||||||||| |||||    
T  52038292 ttctttttgtctctctcacatatacaattcaaagaaaaaccatgaccatgtgtattagataaatttc 52038226  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 35644433 - 35644368
Alignment:
Q  251 cttgcaaagcctcaaacttgcatgagtatgagtggtgaaatagtaaggaattaaaatattctactt 316  Q
    |||||||||||||||||||  |||| | | |||||||||  ||||||||||| |||||||||||||    
T  35644433 cttgcaaagcctcaaacttatatgaatctcagtggtgaatcagtaaggaattcaaatattctactt 35644368  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 5742407 - 5742314
Alignment:
Q  11 ttgcactacagggtcctataaaaggtttgttgcaaatatggacttggtgacatctaaagcggttggttagtggtaaattattttttctgtagtt 104  Q
    ||||| |||| |||||||||||| || || |||||||||||||||| ||||||||| |  | ||| ||| |||||||||| | ||| |||||||    
T  5742407 ttgcagtacaaggtcctataaaaagtctgatgcaaatatggacttgatgacatctacatggattgattactggtaaattaatctttttgtagtt 5742314  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 1685951 - 1685885
Alignment:
Q  140 ttctctttgtgtctctcactcatacaataaaaagtaaaaccatgaccatctgtattagatacatttc 206  Q
    |||| ||||| ||||||||  |||||||  |||| |||||||||||||| ||||||||||| |||||    
T  1685951 ttctttttgtctctctcacatatacaattcaaagaaaaaccatgaccatgtgtattagataaatttc 1685885  T

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