View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_34 (Length: 345)
Name: NF19782_high_34
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 40235228 - 40235555
Alignment:
| Q |
1 |
attttacaaaagttaatatgacttaggaatgcggtttttaaaaaattatggcaaactcacta---taatactccacattaacttgaatactccaaattat |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
40235228 |
attttacaaaagttaatatgacttaggaatgcggtttttaaaaaattatggcaaactcactagtataatactccacattaactttaatactccaaattat |
40235327 |
T |
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| Q |
98 |
ggcaaactcactgtaatactccaaattatgctagctcaacgatgattgaatatatatactaaatataataattagatcaaaggtttttgtctaaatatgg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235328 |
ggcaaactcactgtaatactccaaattatgctagctcaacaatgattgaatat--atactaaatataataattagatcaaaggtttttgtctaaatatgg |
40235425 |
T |
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| Q |
198 |
ttccaagatgtcggatctttgctaaatgtatatctgttgtttgattgtaaggttaagttgatggtccattatgtggatcctttcttcacttgtggttgac |
297 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235426 |
ttccaagatgtcgtatctttgctaaatgtatatctgttgtttgattgtaaggttaagttgatggtccattatgtggatcctttcttcacttgtggttgac |
40235525 |
T |
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| Q |
298 |
tttggggaaagtatattctgttgcatattt |
327 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40235526 |
tttggggaaagtatattctgttgcatattt |
40235555 |
T |
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