View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_35 (Length: 341)

Name: NF19782_high_35
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_35
NF19782_high_35
[»] chr4 (28 HSPs)
chr4 (20-172)||(21094304-21094456)
chr4 (260-329)||(7246647-7246716)
chr4 (253-329)||(53599101-53599177)
chr4 (258-329)||(21429342-21429413)
chr4 (263-329)||(3159473-3159539)
chr4 (253-341)||(3574442-3574528)
chr4 (260-341)||(15732449-15732530)
chr4 (260-329)||(17080084-17080153)
chr4 (260-329)||(24166491-24166560)
chr4 (260-341)||(29895816-29895897)
chr4 (268-329)||(31588727-31588788)
chr4 (292-341)||(42722412-42722461)
chr4 (260-329)||(47078499-47078568)
chr4 (260-341)||(55921063-55921144)
chr4 (260-328)||(40780862-40780930)
chr4 (270-329)||(20532420-20532479)
chr4 (271-329)||(6779252-6779310)
chr4 (253-315)||(25406557-25406619)
chr4 (260-329)||(13073579-13073648)
chr4 (260-341)||(14124045-14124126)
chr4 (260-329)||(14567280-14567349)
chr4 (260-329)||(16450341-16450410)
chr4 (268-333)||(25103758-25103823)
chr4 (260-333)||(33647758-33647831)
chr4 (260-329)||(38166068-38166137)
chr4 (260-329)||(42722578-42722647)
chr4 (253-341)||(20421802-20421890)
chr4 (253-333)||(36145209-36145289)
[»] chr5 (24 HSPs)
chr5 (253-341)||(21375376-21375464)
chr5 (251-333)||(42086360-42086442)
chr5 (253-341)||(13664285-13664373)
chr5 (253-341)||(19572749-19572837)
chr5 (253-329)||(38897713-38897789)
chr5 (260-341)||(20255394-20255475)
chr5 (253-341)||(4016249-4016337)
chr5 (253-329)||(5731914-5731990)
chr5 (260-329)||(20525875-20525944)
chr5 (264-341)||(35561823-35561900)
chr5 (260-329)||(40117452-40117521)
chr5 (253-341)||(1538456-1538544)
chr5 (253-333)||(3653908-3653988)
chr5 (253-329)||(9805041-9805117)
chr5 (253-329)||(12766168-12766244)
chr5 (260-328)||(14728121-14728189)
chr5 (260-315)||(28857197-28857252)
chr5 (268-326)||(2485236-2485294)
chr5 (260-310)||(28857005-28857055)
chr5 (260-329)||(8513556-8513625)
chr5 (296-341)||(20156181-20156226)
chr5 (253-333)||(22655152-22655231)
chr5 (285-341)||(24463912-24463968)
chr5 (253-341)||(42861212-42861300)
[»] chr2 (26 HSPs)
chr2 (253-341)||(34346281-34346369)
chr2 (268-341)||(33005775-33005848)
chr2 (265-341)||(331525-331601)
chr2 (253-329)||(12455346-12455422)
chr2 (253-329)||(38005438-38005514)
chr2 (260-341)||(16325619-16325700)
chr2 (260-333)||(18902531-18902604)
chr2 (260-341)||(41031907-41031988)
chr2 (254-327)||(44945631-44945704)
chr2 (253-341)||(8410155-8410243)
chr2 (253-329)||(10823096-10823172)
chr2 (268-328)||(18649035-18649095)
chr2 (253-341)||(34356230-34356318)
chr2 (253-329)||(41220671-41220747)
chr2 (260-341)||(20612535-20612617)
chr2 (264-329)||(10026621-10026686)
chr2 (260-341)||(12864248-12864329)
chr2 (260-341)||(14169610-14169691)
chr2 (260-329)||(25540405-25540474)
chr2 (288-333)||(41187881-41187926)
chr2 (260-329)||(44773299-44773368)
chr2 (292-328)||(2784969-2785005)
chr2 (264-328)||(10046482-10046546)
chr2 (253-341)||(15234055-15234143)
chr2 (253-329)||(22593170-22593245)
chr2 (268-328)||(34420240-34420300)
[»] chr1 (20 HSPs)
chr1 (253-333)||(34719809-34719889)
chr1 (260-333)||(16956499-16956572)
chr1 (253-329)||(43959816-43959892)
chr1 (253-341)||(49078139-49078227)
chr1 (269-338)||(41696609-41696678)
chr1 (253-341)||(8764016-8764104)
chr1 (253-341)||(17641999-17642087)
chr1 (253-341)||(18915892-18915980)
chr1 (260-329)||(12036745-12036815)
chr1 (253-310)||(892297-892354)
chr1 (268-329)||(5855559-5855620)
chr1 (260-341)||(10422813-10422894)
chr1 (260-333)||(18649354-18649427)
chr1 (260-341)||(26325837-26325918)
chr1 (268-341)||(32142856-32142929)
chr1 (292-333)||(44716249-44716290)
chr1 (268-341)||(50503371-50503444)
chr1 (268-328)||(15466003-15466063)
chr1 (253-329)||(37339857-37339933)
chr1 (253-341)||(41663851-41663939)
[»] scaffold0291 (1 HSPs)
scaffold0291 (260-341)||(6882-6963)
[»] chr8 (16 HSPs)
chr8 (253-329)||(11298261-11298337)
chr8 (260-341)||(3418514-3418595)
chr8 (268-341)||(12754053-12754126)
chr8 (260-341)||(45521196-45521277)
chr8 (253-333)||(583848-583928)
chr8 (253-341)||(33935730-33935817)
chr8 (253-328)||(14846616-14846691)
chr8 (260-341)||(15884557-15884638)
chr8 (253-329)||(10927646-10927722)
chr8 (253-333)||(22212509-22212589)
chr8 (260-329)||(4479297-4479366)
chr8 (260-329)||(8997545-8997614)
chr8 (268-341)||(9860004-9860077)
chr8 (263-328)||(11785956-11786021)
chr8 (268-341)||(16291212-16291285)
chr8 (260-328)||(3379813-3379881)
[»] chr7 (21 HSPs)
chr7 (253-341)||(13095885-13095973)
chr7 (260-328)||(10317747-10317814)
chr7 (253-341)||(18785696-18785784)
chr7 (253-341)||(45959997-45960085)
chr7 (260-310)||(22268042-22268092)
chr7 (260-341)||(27028306-27028387)
chr7 (260-329)||(38578868-38578937)
chr7 (253-329)||(1605980-1606056)
chr7 (253-329)||(43861966-43862042)
chr7 (253-333)||(48244350-48244430)
chr7 (260-341)||(43346780-43346861)
chr7 (260-341)||(45697191-45697272)
chr7 (260-341)||(48804710-48804791)
chr7 (260-328)||(8734687-8734755)
chr7 (253-329)||(22974006-22974082)
chr7 (253-321)||(32768984-32769052)
chr7 (263-341)||(5039422-5039500)
chr7 (260-341)||(3353451-3353532)
chr7 (253-333)||(14650352-14650432)
chr7 (253-329)||(22993361-22993437)
chr7 (253-325)||(48551900-48551972)
[»] chr3 (24 HSPs)
chr3 (253-333)||(24506643-24506723)
chr3 (260-341)||(3507535-3507616)
chr3 (253-341)||(3136689-3136777)
chr3 (253-341)||(25294984-25295072)
chr3 (253-341)||(26043836-26043924)
chr3 (253-341)||(29127943-29128031)
chr3 (263-333)||(50405608-50405678)
chr3 (260-341)||(29762157-29762238)
chr3 (260-341)||(53649751-53649832)
chr3 (260-329)||(54261262-54261331)
chr3 (253-329)||(8362613-8362689)
chr3 (253-341)||(43330727-43330815)
chr3 (253-325)||(44064584-44064656)
chr3 (251-327)||(47219182-47219258)
chr3 (253-329)||(49021198-49021274)
chr3 (270-329)||(8164589-8164648)
chr3 (260-341)||(2668085-2668166)
chr3 (260-341)||(7328868-7328948)
chr3 (260-333)||(23511599-23511672)
chr3 (268-341)||(35315980-35316053)
chr3 (268-341)||(49198375-49198448)
chr3 (260-333)||(51682956-51683029)
chr3 (253-341)||(7310698-7310786)
chr3 (267-339)||(32522005-32522077)
[»] scaffold0002 (2 HSPs)
scaffold0002 (260-341)||(597-678)
scaffold0002 (253-329)||(319461-319537)
[»] scaffold0209 (1 HSPs)
scaffold0209 (253-333)||(12608-12688)
[»] chr6 (14 HSPs)
chr6 (260-341)||(5253224-5253305)
chr6 (253-329)||(9633619-9633695)
chr6 (253-329)||(21898688-21898764)
chr6 (253-329)||(30788847-30788923)
chr6 (260-333)||(11142639-11142712)
chr6 (260-341)||(13036005-13036086)
chr6 (260-341)||(8938739-8938820)
chr6 (268-341)||(30410473-30410546)
chr6 (268-341)||(32157176-32157249)
chr6 (253-329)||(8888922-8888997)
chr6 (253-341)||(8932689-8932777)
chr6 (253-341)||(8944155-8944243)
chr6 (253-341)||(13468961-13469049)
chr6 (253-329)||(29444759-29444835)
[»] scaffold0316 (1 HSPs)
scaffold0316 (260-329)||(1615-1684)
[»] scaffold0041 (1 HSPs)
scaffold0041 (260-341)||(25112-25193)
[»] scaffold0004 (1 HSPs)
scaffold0004 (253-338)||(7829-7914)
[»] scaffold0009 (1 HSPs)
scaffold0009 (260-328)||(42833-42901)
[»] scaffold0010 (1 HSPs)
scaffold0010 (253-327)||(155705-155779)
[»] scaffold0005 (1 HSPs)
scaffold0005 (260-329)||(250026-250095)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 21094456 - 21094304
Alignment:
Q  20 aaattagaaagtaggagatcgagtttgtagttgagatataacaattgagaaaaataaaaagaagtctaatggaaagaatctatttctctaggatacttct 119  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  21094456 aaattagaaagtaggaaatcgagtttgtagttgagatataacaattgagaaaaatgaaaagaactctaatggagagaatctatttctctaggatacttct 21094357  T
Q  120 tttgagaacgtaatcaacgatggttagtctagctggtaagaatcgactcatat 172  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  21094356 tttgaaaacgtaatcaatgatggttagtctagctggtaagaatggactcatat 21094304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 7246647 - 7246716
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| |||||| ||||| |||||||||| | ||||||| |||| |||||||||||||    
T  7246647 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactgg 7246716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 53599177 - 53599101
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| |||||||||||||| | |||||| ||| ||||| | ||||||| |||| |||||||||||||    
T  53599177 tttggctttcgcaccggtttccgatccactaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcactgg 53599101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 21429413 - 21429342
Alignment:
Q  258 cattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||||| ||||||||| |||||| |||||  |||||| |||||||| ||| |||| |||||||||||||    
T  21429413 cattcgcaccggtttccgacccaccaaaggtggacgactagtctgactcgtgcgtagaggcatgcgcactgg 21429342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 3159473 - 3159539
Alignment:
Q  263 gcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||| ||||||||| ||||||  ||||||||||||||||| ||| ||| |||| |||||||||||||    
T  3159473 gcaccggtttccgacccaccaatggtgagcgactaatctggctcgtgcgtagaggcatgcgcactgg 3159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 3574442 - 3574528
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||| ||| |||||||||  ||||  |||||||||||||||| ||||| ||| |||| ||||||||||||| ||| |||||||    
T  3574442 tttggctttctcaccggtttccga--cacctaaggtgagcgactaatccgactcgtgcgtagaggcatgcgcactggccaagtgttgtt 3574528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 15732449 - 15732530
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| |||||||||||||||| || ||||||||||||||  | | ||| |||| ||||| ||||||| ||| |||||||    
T  15732449 ttcgcaccggtttccgatccaccaaagatgagcgactaatctagcccgtgcgtagaggcatgtgcactggccaagtgttgtt 15732530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 17080153 - 17080084
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||| ||||||| || ||||| |||||||||| | ||||||| |||| |||||||||||||    
T  17080153 ttcgcaccggttttcgatccatcaaaggtgtgcgactaatccggctcatgcgtagaggcatgcgcactgg 17080084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 24166560 - 24166491
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||||||| || ||||| | |||||||||| ||| ||| |||| |||||||||||||    
T  24166560 ttcgcaccggtttccgatccatcaaaggtgggtgactaatctggctcgtgcgtagaggcatgcgcactgg 24166491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 29895897 - 29895816
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||||||  ||||  ||||||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  29895897 ttcgcaccggtttccgaaccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 29895816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 31588788 - 31588727
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||||||||||||| | |||||||||||||| | ||||||| ||||  ||||||||||||    
T  31588788 ggtttccgatccaccaaaagtgagcgactaatccggctcatgcgtagagacatgcgcactgg 31588727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 42722412 - 42722461
Alignment:
Q  292 cgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||| |||||||||||||| | ||||||||||||||| |||||||    
T  42722412 cgactaatccgactcatgcatagaggtatgcgcactggtcaagtgttgtt 42722461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 47078568 - 47078499
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||||||||||||| ||||||  ||||||||||||||| | ||| ||| |||| ||||| |||||||    
T  47078568 ttcgcactggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgtgcactgg 47078499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 55921144 - 55921063
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| |||||| |||||||||| ||||| | ||||| | |||| ||||||||||||  ||| |||||||    
T  55921144 ttcgcaccggtttccgacccaccaaaggtgagcgattaatccggctcatacgtagaggcatgcgcactgaccaagtgttgtt 55921063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 40780862 - 40780930
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    ||||||| ||||||||| |||||| |||||  ||||||||| | ||||||| |||| ||||||||||||    
T  40780862 ttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactg 40780930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 20532420 - 20532479
Alignment:
Q  270 tttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||||||||||| ||||| |||||| ||| | ||||||| |||| |||||||||||||    
T  20532420 tttccgatccaccaaaggtgggcgacttatccggctcatgcgtagaggcatgcgcactgg 20532479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 6779310 - 6779252
Alignment:
Q  271 ttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||| |||||  ||||||||| | |||||||||||| |||||||||||||    
T  6779310 ttccgattcaccaaaggtggacgactaatccggctcatgcatagaggcatgcgcactgg 6779252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 25406557 - 25406619
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcataga 315  Q
    |||||| ||||||| ||||||||| ||| || |||||| |||||||||||| |||||| ||||    
T  25406557 tttggctttcgcaccggtttccgacccatcaaaggtgaacgactaatctgattcatgcgtaga 25406619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 13073648 - 13073579
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| |||||| |||| | |||||||||||  |||||| |||| | |||||||||||    
T  13073648 ttcgcaccggtttccgacccaccaaaggtaaacgactaatctggttcatgcgtagaggtatgcgcactgg 13073579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 14124126 - 14124045
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||| | ||||||  ||||||||||||||| | ||| ||  |||| ||||||||||||| ||| |||||||    
T  14124126 ttcgcaccggtttccaacccaccaatggtgagcgactaatccggctcgtgtgtagaggcatgcgcactggccaaatgttgtt 14124045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 14567349 - 14567280
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| | ||||||| |||||| ||| |||||||||||| | ||| ||| |||| |||||||||||||    
T  14567349 ttcgcaccgatttccgacccaccaaaggcgagcgactaatccggctcgtgcgtagaggcatgcgcactgg 14567280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 16450410 - 16450341
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| | |||| |||||  ||||||||||| ||||||| |||| ||||| |||||||    
T  16450410 ttcgcaccggtttccgacctaccaaaggtggacgactaatctggctcatgcgtagaggcatgtgcactgg 16450341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 25103758 - 25103823
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||||||| |||||  | |||| ||||||||  |||||||| |||| |||||||||||||||||    
T  25103758 ggtttccgattcaccactgttgagagactaatccaactcatgcgtagaggcatgcgcactggtcaa 25103823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 33647831 - 33647758
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    ||||||| |||||||||||||||| || ||| |||||||||||  || ||| |||| | ||| |||||||||||    
T  33647831 ttcgcaccggtttccgatccaccaaagatgaacgactaatctggttcgtgcgtagaggaatgtgcactggtcaa 33647758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 38166137 - 38166068
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| |||||| ||||| |||||||||| | ||| ||| ||||  ||||||||||||    
T  38166137 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactgg 38166068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 42722578 - 42722647
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||| ||| |||| | |||||| ||||||||| | ||||||| |||| |||||||||||||    
T  42722578 ttcgcaccggttttcgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactgg 42722647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 20421890 - 20421802
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| |||| |||||||||||| ||| ||  | ||  ||| ||||||| ||||||| |||| ||||||||||||| ||| |||||||    
T  20421890 tttggctttcgaactggtttccgacccatcaatgatggacgattaatctggctcatgcgtagaggcatgcgcactggccaagtgttgtt 20421802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 36145209 - 36145289
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||| ||||||| |||||||||| || || |||||  ||||||||| | ||||||  |||| |||||||||||| ||||    
T  36145209 tttggctttcgcaccggtttccgattcatcaaaggtggacgactaatccggctcatgtgtagaggcatgcgcactgatcaa 36145289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 21375464 - 21375376
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||||||||||||||||| || || ||  ||||||||| ||||||||| |||| ||||||||||||||||| |||||||    
T  21375464 tttggctttcgcactggtttccgatccatcaaagatggacgactaatccgactcatgcgtagaagcatgcgcactggtcaaatgttgtt 21375376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 42086442 - 42086360
Alignment:
Q  251 tctttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||||| ||||||| ||||||||| |||||| |||||  ||||||||| | ||||||| |||| |||||||||||||||||    
T  42086442 tctttggctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaa 42086360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 13664373 - 13664285
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| |||||||||  ||||| |||||| ||| ||||||| ||||||| |||| ||||||||||||| ||| |||||||    
T  13664373 tttggctttcgcaccggtttccgacacaccaaaggtgatcgattaatctggctcatgcgtagaggcatgcgcactggccaagtgttgtt 13664285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 19572837 - 19572749
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||||||||||| | ||||||  ||||| ||||||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  19572837 tttggctttcgcactggtttccaacccaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 19572749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 38897713 - 38897789
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| |||||||||||||||||||||||| ||||| || ||||||| | ||| ||| |||| |||||||||||||    
T  38897713 tttggctttcgcactggtttccgatccaccaaaggtgggcaactaatccggctcgtgcgtagaggcatgcgcactgg 38897789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 20255475 - 20255394
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||||  ||||||||  ||||| |||||  ||||||||| ||||||||| |||| ||||||||||||||||| |||||||    
T  20255475 ttcgcaccagtttccgactcaccaaaggtggacgactaatccgactcatgcgtagaggcatgcgcactggtcaagtgttgtt 20255394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 4016249 - 4016337
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||||||||||||| ||||||  ||||||| ||||||| | ||| ||  |||| ||||||||||||| ||| |||||||    
T  4016249 tttggctttcgcactggtttccgacccaccaatggtgagcaactaatccggctcgtgtgtagaggcatgcgcactggccaagtgttgtt 4016337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 5731914 - 5731990
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||||| |||| | |||||| ||||||||||| ||||| | |||| |||||||||||||    
T  5731914 tttggctttcgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcactgg 5731990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 20525944 - 20525875
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||||||||||  ||||  ||||||||| | ||||||| |||| |||||||||||||    
T  20525944 ttcgcaccggtttccgatccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactgg 20525875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 35561823 - 35561900
Alignment:
Q  264 cactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||| ||||||| | ||||  ||||||||||||||||| ||||||  |||| ||||||||||||||||  |||||||    
T  35561823 cactgatttccgacctaccaacggtgagcgactaatctggctcatgtgtagaggcatgcgcactggtcaggtgttgtt 35561900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 40117521 - 40117452
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||| |||||||||| |||||| ||| ||||| | ||||||| |||| |||||||||||||    
T  40117521 ttcgcaccggttttcgatccaccaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcactgg 40117452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 1538544 - 1538456
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||||| ||||||  ||||  ||| ||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  1538544 tttggctttcgcaccggtttccgacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 1538456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 3653908 - 3653988
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||| || |||| ||||| |||||||||| |||||  ||||||||| | ||| ||| |||| |||||||||||||||||    
T  3653908 tttggcttttgcaccggttttcgatccaccaaaggtggacgactaatccgcctcgtgcgtagaggcatgcgcactggtcaa 3653988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 9805117 - 9805041
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| |||||||  |||||||| |||||| |||||  ||||||||| | ||||||| |||| |||||||||||||    
T  9805117 tttggctttcgcacctgtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactgg 9805041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 12766244 - 12766168
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| |||||| || |||||| ||||| ||||||||||||  |||||| |||| |||||| ||||||    
T  12766244 tttggctttcgcaccggtttctgacccaccaaaggtgggcgactaatctggttcatgcgtagaggcatgcacactgg 12766168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 328
Target Start/End: Complemental strand, 14728189 - 14728121
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    ||||||| ||||||||| ||| || |||||||| ||||||| | ||||||| |||| ||||||||||||    
T  14728189 ttcgcaccggtttccgacccatcaaaggtgagcaactaatccggctcatgcgtagaggcatgcgcactg 14728121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 28857252 - 28857197
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcataga 315  Q
    ||||||| ||||||||| |||||| |||||||||||||||| | ||||||| ||||    
T  28857252 ttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtaga 28857197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 2485294 - 2485236
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcac 326  Q
    ||||||||| ||| || |||||||||||||||| ||||||| | |||| ||||||||||    
T  2485294 ggtttccgacccatcaaaggtgagcgactaatccgactcatacgtagaggcatgcgcac 2485236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 28857055 - 28857005
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgc 310  Q
    ||||||| ||||||||| |||||| |||||||||||||||| | |||||||    
T  28857055 ttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgc 28857005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 8513625 - 8513556
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| |||||| |||||  ||||||||||| ||| ||| |||| ||||| |||||||    
T  8513625 ttcgcaccggtttccgacccaccaaaggtggacgactaatctggctcgtgcgtagaggcatgtgcactgg 8513556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 20156181 - 20156226
Alignment:
Q  296 taatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||||||||||||||||| ||||||||||| | ||| |||||||    
T  20156181 taatctgactcatgcatagatgcatgcgcactagccaagtgttgtt 20156226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 22655152 - 22655231
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||| ||||||||||||| ||| |||| | |||||  |||||||||||||| |||| |||| |||||| ||||| ||||    
T  22655152 tttggctttcgcactggttttcgacccacaa-aggtggacgactaatctgacttatgcgtagaggcatgcacactgatcaa 22655231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 24463912 - 24463968
Alignment:
Q  285 aggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||| |||||||||| | ||| |||||||| ||||||||||||| |||| ||||||    
T  24463912 aggtgggcgactaatccggctcgtgcatagaggcatgcgcactggccaatcgttgtt 24463968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 42861212 - 42861300
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||| ||||| ||||||  ||||  ||| ||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  42861212 tttggctttcgcaccggtctccgacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 42861300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 34346281 - 34346369
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||||| |||||| |||||||||| ||||||||||||||| |||| |||||| |||||| ||| |||||||    
T  34346281 tttggctttcgcaccggtttccgacccaccaaaggtgagcgattaatctgactcatgcgtagaggcatgcacactggccaagtgttgtt 34346369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 33005848 - 33005775
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||| |||| | |||||||||| ||||||| ||||||| |||| ||||||||||||| ||| |||||||    
T  33005848 ggtttccgacccactaaaggtgagcgattaatctgcctcatgcgtagaggcatgcgcactggccaagtgttgtt 33005775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 331601 - 331525
Alignment:
Q  265 actggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||||||| | |||||| ||||| |||||||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  331601 actggtttccaacccaccaaaggtgggcgactaatccggctcatgcgtagaagcatgcgcactggccaagtgttgtt 331525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 12455422 - 12455346
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||||| ||||||  ||||||||||||||| | ||| ||| |||| |||||||||||||    
T  12455422 tttggctttcgcaccggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgcgcactgg 12455346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 38005514 - 38005438
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| |||||||  ||||||||||||||| ||||| |||||||||| | ||||||  |||| |||||||||||||    
T  38005514 tttggctttcgcaccagtttccgatccaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactgg 38005438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 16325700 - 16325619
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||||||  ||||  ||||||||||| ||||||| |||| |||||| |||||| ||| |||||||    
T  16325700 ttcgcaccggtttccgacccaccaatggtggacgactaatctggctcatgcgtagaggcatgcacactggccaagtgttgtt 16325619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 18902531 - 18902604
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    ||||||| ||||||||| |||||| ||||| |||||||||||| ||| ||| ||||  || |||||||||||||    
T  18902531 ttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgtagagacacgcgcactggtcaa 18902604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 41031907 - 41031988
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||||||||||| |||||| ||||| | |||||||| | ||| ||| |||| |||||| |||||| ||| |||||||    
T  41031907 ttcgcactggtttccgacccaccaaaggtgggtgactaatccggctcgtgcgtagaggcatgcacactggccaagtgttgtt 41031988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 44945704 - 44945631
Alignment:
Q  254 ttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcact 327  Q
    ||||| ||||||| |||||||||||||| | ||||| |||||||||| | ||| ||| |||| |||||||||||    
T  44945704 ttggctttcgcaccggtttccgatccactaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcact 44945631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 8410243 - 8410155
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||||| || ||| | ||| |||||||||| | ||| ||| |||| ||||||||||||| ||| |||||||    
T  8410243 tttggctttcgcaccggtttccgaccccccaaaagtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtt 8410155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 10823172 - 10823096
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||||| |||| | ||||| |||||||||| | ||| ||| |||| |||||||||||||    
T  10823172 tttggctttcgcaccggtttccgacccacaaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactgg 10823096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 18649035 - 18649095
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    ||||||| | |||||| | |||||||||||||| ||||||||| |||| ||||||||||||    
T  18649035 ggtttccaacccaccaaaagtgagcgactaatccgactcatgcgtagaggcatgcgcactg 18649095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 34356318 - 34356230
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||||||||| |||||||| ||| ||  ||||  ||| ||||| | |||||||||||| ||||||||||||  ||| |||||||    
T  34356318 tttggcattcgcactcgtttccgacccatcaatggtgcacgattaatccggctcatgcatagaggcatgcgcactgaccaagtgttgtt 34356230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 41220747 - 41220671
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||||| |||| | |||||| ||||||||  | ||||||| |||| |||||||||||||    
T  41220747 tttggctttcgcaccggtttccgacccactaaaggtgaacgactaattcggctcatgcgtagaggcatgcgcactgg 41220671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 20612535 - 20612617
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatct-gactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||||||  ||||  |||||||||  | |||||||||||| ||||||||||||| ||| |||||||    
T  20612535 ttcgcaccggtttccgacccaccaatggtggacgactaatcccggctcatgcatagaggcatgcgcactggccaagtgttgtt 20612617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 10026621 - 10026686
Alignment:
Q  264 cactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||| |||||||| |||||| |||||  ||||||||| | ||||||| |||| |||||||||||||    
T  10026621 cactagtttccgacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactgg 10026686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 12864329 - 12864248
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||||||  ||||  ||||||||||| |||||||  ||| ||||||||||||  ||| |||||||    
T  12864329 ttcgcaccggtttccgacccaccaatggtggacgactaatctggctcatgcgcagaggcatgcgcactgaccaagtgttgtt 12864248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 14169610 - 14169691
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||||||  |||   ||||||||| | ||||||| ||||  |||||||||||||||| |||||||    
T  14169610 ttcgcaccggtttccgacccaccaatggtagacgactaatccggctcatgcgtagagacatgcgcactggtcaagtgttgtt 14169691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 25540405 - 25540474
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| |||||| |||||  ||||||||| | ||| ||| |||| |||||||||||||    
T  25540405 ttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactgg 25540474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 41187926 - 41187881
Alignment:
Q  288 tgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    ||||||||||||| | ||||||| |||| |||||||||||||||||    
T  41187926 tgagcgactaatccgtctcatgcgtagaggcatgcgcactggtcaa 41187881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 44773368 - 44773299
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| ||| || |||||||||||||||| | |||| ||| ||| |||||| ||||||    
T  44773368 ttcgcaccggtttccgacccatcaaaggtgagcgactaatccggctcacgcacagaggcatgcacactgg 44773299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 2785005 - 2784969
Alignment:
Q  292 cgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  2785005 cgactaatctgactcatgcgtagaggcatgcgcactg 2784969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 10046482 - 10046546
Alignment:
Q  264 cactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    |||| |||||||| |||||| |||||  ||||||||| | ||||||| |||| ||||||||||||    
T  10046482 cactagtttccgacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactg 10046546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 15234055 - 15234143
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||  ||||||||| | | || || ||| |||||||||| |||  ||| |||| ||||||||||||||||| |||||||    
T  15234055 tttggctttcgcatcggtttccgacctatcaaagatgaacgactaatctaacttgtgcgtagaggcatgcgcactggtcaagtgttgtt 15234143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 22593245 - 22593170
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| |||| |||| |||||| |||||  ||||||||| | ||||||| |||| |||||||||||||    
T  22593245 tttggctttcgcaccggtt-ccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactgg 22593170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 34420300 - 34420240
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    ||||||||| |||||| |  |||| ||||||||||||||||||||||  |||||| |||||    
T  34420300 ggtttccgacccaccaaaattgagtgactaatctgactcatgcataggggcatgcacactg 34420240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 34719889 - 34719809
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||| |||||||  |||||||| |||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  34719889 tttggctttcgcaccagtttccgacccaccaaaggtgagcgactaatctgactcgtgcgtagaggcatgcgcactggtcaa 34719809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 16956572 - 16956499
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    ||||||||||||||||| |||||| ||||||| |||||||| | ||| ||| |||| |||||||||||||||||    
T  16956572 ttcgcactggtttccgacccaccaaaggtgagtgactaatccggctcgtgcgtagaggcatgcgcactggtcaa 16956499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 43959816 - 43959892
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| |||||||||||||| | ||||| |||||||||| | ||| ||| |||| |||||||||||||    
T  43959816 tttggctttcgcaccggtttccgatccactaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactgg 43959892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 49078227 - 49078139
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||||| | ||||  ||||| ||||||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  49078227 tttggctttcgcaccggtttccgacctaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 49078139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 41696609 - 41696678
Alignment:
Q  269 gtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgtt 338  Q
    |||||||||||| || ||||||||||||||||||| || ||| |||| |||| | |||||||||| ||||    
T  41696609 gtttccgatccatcaaaggtgagcgactaatctgattcgtgcgtagaggcatacacactggtcaagtgtt 41696678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 8764104 - 8764016
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||||| ||||||  ||||  ||||||||| | ||| ||| |||| ||||||||||||| ||| |||||||    
T  8764104 tttggctttcgcaccggtttccgacccaccaacggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtt 8764016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 17641999 - 17642087
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| |||||||  |||||||| |||||| |||||  ||||||||| | ||| ||| |||| ||||||||||||| ||| |||||||    
T  17641999 tttggctttcgcaccagtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtt 17642087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 18915980 - 18915892
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||| | ||||||  ||||||||||||||| | ||| ||| |||| |||||| |||||| ||| |||||||    
T  18915980 tttggctttcgcaccggtttccaacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgcacactggccaagtgttgtt 18915892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 12036745 - 12036815
Alignment:
Q  260 ttcgcactggttt-ccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||||||||| ||||||||||| |||||  ||| ||||||| ||| ||| |||| |||||||||||||    
T  12036745 ttcgcactggttttccgatccaccaaaggtggacgattaatctggctcgtgcgtagaggcatgcgcactgg 12036815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 892297 - 892354
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgc 310  Q
    |||||| ||||||| | |||||||||||||| ||||| |||||||||| | |||||||    
T  892297 tttggctttcgcaccgatttccgatccaccaaaggtgggcgactaatccggctcatgc 892354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 5855620 - 5855559
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||||| |||| | |||||| ||||||||| | ||||||| |||| |||||||||||||    
T  5855620 ggtttccgacccactaaaggtgaacgactaatccgcctcatgcgtagaggcatgcgcactgg 5855559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 10422894 - 10422813
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| |||||||||   |||| |||||  ||||||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  10422894 ttcgcaccggtttccgacttaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 10422813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 18649354 - 18649427
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    ||||||| ||||||| |||||| | ||||| |||| ||||||| ||| | | |||| |||||||||||||||||    
T  18649354 ttcgcaccggtttccaatccactaaaggtgggcgattaatctggctcgtacgtagaggcatgcgcactggtcaa 18649427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 26325918 - 26325837
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||||||  ||||  ||||||||| | ||||||| |||| ||||||||||||  ||| |||||||    
T  26325918 ttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgtt 26325837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 32142856 - 32142929
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||| ||| || |||||||||||||||  | ||||||| || | ||||||||||||| ||| |||||||    
T  32142856 ggtttccgacccatcaaaggtgagcgactaattcggctcatgcgtaaaggcatgcgcactggccaagtgttgtt 32142929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 44716249 - 44716290
Alignment:
Q  292 cgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||||||||||||||||||| | ||||||||||| |||||    
T  44716249 cgactaatctgactcatgcataaaggcatgcgcactagtcaa 44716290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 50503371 - 50503444
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||| ||||||  |||| ||||| |||| | ||| ||| |||| ||||||||||||||||| |||||||    
T  50503371 ggtttccgacccaccattggtgggcgacaaatccggctcgtgcgtagaggcatgcgcactggtcaagtgttgtt 50503444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 15466063 - 15466003
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    ||||||||| |||||| ||||||||||| |||| ||||| ||| |||| ||||| ||||||    
T  15466063 ggtttccgacccaccaaaggtgagcgaccaatcagactcgtgcgtagaggcatgtgcactg 15466003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 37339933 - 37339857
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||| | |||||| ||||| |||||||||| | ||| ||| | || |||||||||||||    
T  37339933 tttggctttcgcaccggtttccaacccaccaaaggtgggcgactaatccggctcgtgcgttgaggcatgcgcactgg 37339857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 41663851 - 41663939
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||||| ||||||  ||||  |||||||||   ||||||| |||| ||||||||||||  ||| |||||||    
T  41663851 tttggctttcgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcgtagaggcatgcgcactgaccaagtgttgtt 41663939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 6963 - 6882
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| |||||| |||||||||||||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  6963 ttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 6882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 11298261 - 11298337
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||||| |||||| |||||||||| |||| || |||||||||||| |||||||||||||    
T  11298261 tttggctttcgcaccggtttccgacccaccaaaggtgagcgattaatttggctcatgcatagaggcatgcgcactgg 11298337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 3418514 - 3418595
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| |||||| || |||| | |||||  ||||||||||||||||||| |||||||||||||||||| ||| |||||||    
T  3418514 ttcgcaccggtttctgacccactaaaggtggacgactaatctgactcatgcgtagacgcatgcgcactggccaagtgttgtt 3418595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 12754126 - 12754053
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||||||| || || ||||||||||||||||||  |||||||| ||||||||||||||| | |||||||    
T  12754126 ggtttccgatccatcaaagatgagcgactaatctgacttgtgcatagaggcatgcgcactggtctaatgttgtt 12754053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 45521277 - 45521196
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||| || |||||||||||||||| | ||||||| |||| |||||||||||| |||| |||||||    
T  45521277 ttcgcaccggtttccgacccatcaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactgatcaagtgttgtt 45521196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 583928 - 583848
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||| ||||||| ||||||  ||||| || ||||| |||||||||| ||||||||| |||| |||||||||||||||||    
T  583928 tttggctttcgcaccggtttctaatccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaa 583848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 33935730 - 33935817
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| |||||| |||||||| | | | ||||||||||||||||||| ||||||||| || | ||||||||||||| ||| |||||||    
T  33935730 tttggctttcgcattggtttccaa-ctatcagaggtgagcgactaatccgactcatgcgtataggcatgcgcactggccaagtgttgtt 33935817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 14846691 - 14846616
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    |||||| ||||||| | ||||||| |||||| |||||  ||||| ||||||||||||| |||| ||||||||||||    
T  14846691 tttggctttcgcaccgatttccgacccaccaaaggtggacgacttatctgactcatgcgtagaggcatgcgcactg 14846616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 15884557 - 15884638
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| |||||| ||||| |||||||||| | ||| ||| |||| ||||||||||| | ||| |||||||    
T  15884557 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcacttgccaagtgttgtt 15884638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 10927722 - 10927646
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||  ||||||||| |||| | |||||| ||||||||| | ||||||| |||| |||||||||||||    
T  10927722 tttggctttcgcatcggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactgg 10927646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 22212509 - 22212589
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||| ||||||| ||||| ||| |||||| |||||||||||||||| | | | ||| |||| ||||||| |||||||||    
T  22212509 tttggctttcgcaccggttttcgaaccaccaaaggtgagcgactaatccggcccgtgcgtagaagcatgcgtactggtcaa 22212589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 4479297 - 4479366
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| |||||| |||||  |||||||||   ||||||| |||| |||||||||||||    
T  4479297 ttcgcaccggtttccgacccaccaaaggtggacgactaatccagctcatgcgtagaggcatgcgcactgg 4479366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 8997545 - 8997614
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| |||||| || ||| ||||||||||| ||||||| || | ||||||| |||||    
T  8997545 ttcgcaccggtttccgacccaccaaagatgaacgactaatctggctcatgcgtataggcatgcgaactgg 8997614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 9860004 - 9860077
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||||||||||  ||||  ||||||||||| ||||||  |||| |||||| |||||| ||| |||||||    
T  9860004 ggtttccgatccaccaatggtggacgactaatctggctcatgtgtagaggcatgcacactggccaagtgttgtt 9860077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 11786021 - 11785956
Alignment:
Q  263 gcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    |||| ||||||||||||| || || ||||||| ||||||| ||||||| |||| |||||| |||||    
T  11786021 gcaccggtttccgatccatcaaagatgagcgattaatctggctcatgcgtagaggcatgcacactg 11785956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 16291212 - 16291285
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||| ||| |||||| ||||||||||||||||   |||||||||||| ||||| | ||||| ||| |||||||    
T  16291212 ggttttcgacccaccaaaggtgagcgactaatccagctcatgcatagaggcatgtgtactggccaagtgttgtt 16291285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 3379813 - 3379881
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    ||||||| | ||||||| |||||| | |||  ||||||||| |||||||||||||| || |||||||||    
T  3379813 ttcgcaccgatttccgacccaccaaaagtggacgactaatccgactcatgcatagaggcgtgcgcactg 3379881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 13095973 - 13095885
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| || |||| ||||||||| |||||| |||||||||||||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  13095973 tttggcttttgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 13095885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 10317747 - 10317814
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    ||||||| |||||||||||||||| |||||||||||||||||| || ||||||||| |||| |||||||    
T  10317747 ttcgcaccggtttccgatccaccaaaggtgagcgactaatctg-cttatgcatagaggcatacgcactg 10317814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 18785784 - 18785696
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||||| ||||||||||||| |||||||||    |||||| |||| ||||||||||||| ||| |||||||    
T  18785784 tttggccttcgcaccggtttccgacccaccagaggtgaacgactaatccagttcatgcgtagaggcatgcgcactggccaagtgttgtt 18785696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 45959997 - 45960085
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||| |||| ||||||||||||| || |||||||||||||||| | || |||| |||| ||||||||||||  ||| |||||||    
T  45959997 tttggcatttgcaccggtttccgatccatcaaaggtgagcgactaatccggcttatgcgtagaggcatgcgcactgaccaagtgttgtt 45960085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 22268042 - 22268092
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgc 310  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  22268042 ttcgcaccggtttccgatccaccaaaggtgagcgactaatctgagtcatgc 22268092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 27028387 - 27028306
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| |||||| ||||||||||||||||   ||||||  |||| ||||||||||||| ||| |||||||    
T  27028387 ttcgcaccggtttccgacccaccaaaggtgagcgactaatccagctcatgtgtagaggcatgcgcactggccaagtgttgtt 27028306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 38578868 - 38578937
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| |||||| ||||| |||||||||| | ||||||| |||| |||||||||||||    
T  38578868 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactgg 38578937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 1606056 - 1605980
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| |||||||||||||||| ||||| |||||||||| | |||| || |||| ||||| |||||||    
T  1606056 tttggctttcgcaccggtttccgatccaccaaaggtgggcgactaatccggctcaagcctagaggcatgtgcactgg 1605980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 43861966 - 43862042
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||| |||||||||| ||||||  |||||||| | ||||||| |||| |||||||||||||    
T  43861966 tttggctttcgcaccggttttcgatccaccaaaggtgaatgactaatccggctcatgcgtagaggcatgcgcactgg 43862042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 48244350 - 48244430
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||| ||||||| ||||| |||||||||| |||||||||||||||| | ||||||| |||| |||  ||||||| ||||    
T  48244350 tttggctttcgcaccggttttcgatccaccaaaggtgagcgactaatccggctcatgcgtagaggcaaacgcactgatcaa 48244430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 43346780 - 43346861
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||||||||||| |||||| || ||||||||||||| | ||| | | |||| |||||||||| || ||| |||||||    
T  43346780 ttcgcactggtttccgacccaccaaagatgagcgactaatccggctcgtacgtagaggcatgcgcaccggccaagtgttgtt 43346861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 45697191 - 45697272
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||| |||||||||||| |||||| |||||  ||||||| |  |||||||| |||| |||||||||||| |||| |||||||    
T  45697191 ttcgtactggtttccgacccaccaaaggtggacgactaacccaactcatgcgtagaggcatgcgcactgatcaagtgttgtt 45697272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 48804791 - 48804710
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||||||  ||||  ||||||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  48804791 ttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 48804710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 8734687 - 8734755
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    ||||||| ||||||||| |||||| ||||| |||||||||||| ||| ||| | || ||||||||||||    
T  8734687 ttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgttgaggcatgcgcactg 8734755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 22974082 - 22974006
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||| | |||||| || |||||| |||||  ||||||||||| ||||||| ||||||||||| ||||||    
T  22974082 tttggctttcgcgccggtttctgacccaccaaaggtggacgactaatctggctcatgcgtagacgcatgcacactgg 22974006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 32769052 - 32768984
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatg 321  Q
    |||||| ||| ||| |||||||||||||||| |||||| ||||||||| ||||| ||| |||| |||||    
T  32769052 tttggctttcacaccggtttccgatccaccaaaggtgaacgactaatccgactcgtgcgtagaggcatg 32768984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 5039422 - 5039500
Alignment:
Q  263 gcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||| ||||| |||||||||| |||||||||||||||| | ||||||| |||| | ||| ||||||  ||| |||||||    
T  5039422 gcaccggttttcgatccaccaaaggtgagcgactaatccggctcatgcgtagaggtatgtgcactgaccaagtgttgtt 5039500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 3353532 - 3353451
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| |||||| |||||| || |||||  ||||||||| | ||| ||| |||| ||||||||||||| ||| |||||||    
T  3353532 ttcgcaccggtttctgatccatcaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaaatgttgtt 3353451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 14650432 - 14650352
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||| ||||||| ||||| | | |||||| |||||||||||||| | | ||||||| |||| ||||  |||||||||||    
T  14650432 tttggctttcgcaccggttttcaacccaccaaaggtgagcgactaacccggctcatgcgtagaggcatatgcactggtcaa 14650352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 22993361 - 22993437
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| |||||| || |||||| |||||||||||||||| |  || ||| |||| |||||| ||||||    
T  22993361 tttggctttcgcaccggtttctgacccaccaaaggtgagcgactaatccggttcgtgcgtagaggcatgcacactgg 22993437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 48551972 - 48551900
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgca 325  Q
    |||||| ||||||| ||||||||||||| || |||||  ||||||||| | ||||| | |||| |||||||||    
T  48551972 tttggctttcgcaccggtttccgatccatcaaaggtggacgactaatccggctcatacgtagaggcatgcgca 48551900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 24506643 - 24506723
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||| || |||| ||||||||| ||||||  ||||||||||||||||||||||||| |||| ||||| |||||||||||    
T  24506643 tttggcttttgcaccggtttccgacccaccaatggtgagcgactaatctgactcatgcgtagaggcatgtgcactggtcaa 24506723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 3507535 - 3507616
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| |||||| |||||||||||||||| | ||| ||| |||| ||||||||||||| ||| |||||||    
T  3507535 ttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtt 3507616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 3136689 - 3136777
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||||| | |||| |||||  ||||||||| ||||||||| |||| ||||||||||||  ||| |||||||    
T  3136689 tttggctttcgcaccggtttccgaccaaccaaaggtggacgactaatccgactcatgcgtagaggcatgcgcactgcccaagtgttgtt 3136777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 25295072 - 25294984
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||| | ||||||  ||||  ||||||||| | |||||||||||| ||||||||||||| ||| |||||||    
T  25295072 tttggctttcgcaccggtttccaacccaccaatggtggacgactaatccggctcatgcatagaggcatgcgcactggccaagtgttgtt 25294984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 26043924 - 26043836
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||| | |||||| ||  ||||| |||||||||||||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  26043924 tttggctttcgccccggtttctgactcaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 26043836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 29128031 - 29127943
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||  ||||||||| |||||| ||||| |||||||||| | ||||||| |||| ||||||||||||  ||| |||||||    
T  29128031 tttggctttcgcatcggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgtt 29127943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 50405608 - 50405678
Alignment:
Q  263 gcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||| ||||||||| ||||||  |||| |||||||||| ||||| ||| |||| |||||||||||||||||    
T  50405608 gcaccggtttccgacccaccaatggtgggcgactaatccgactcgtgcgtagaggcatgcgcactggtcaa 50405678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 29762157 - 29762238
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||||||  ||||  |||||||||   |||||||||||| ||||||||||||| ||| |||||||    
T  29762157 ttcgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcatagaggcatgcgcactggccaagtgttgtt 29762238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 53649832 - 53649751
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||||||| || |||||| ||||||||| | ||||||| ||||  || ||||||||| ||| |||||||    
T  53649832 ttcgcaccggtttccgatccatcaaaggtgaacgactaatccggctcatgcgtagagacaggcgcactggccaagtgttgtt 53649751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 54261331 - 54261262
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||||||| |||| | |||||| ||||||||| | ||||||| |||| |||||||||||||    
T  54261331 ttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactgg 54261262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 8362689 - 8362613
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||||||||||| |||||| ||||||| | |||||  |||||||| || ||||||| |||| ||||||| |||||    
T  8362689 tttggcattcgcaccggtttcggatccactaaaggtggacgactaatttggctcatgcgtagaggcatgcggactgg 8362613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 43330727 - 43330815
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| |||| || |||||  || |||||| ||||| |||||||||| | ||| ||| |||| ||||||||||||||||| |||||||    
T  43330727 tttggctttcgtaccggtttttgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagtgttgtt 43330815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 44064656 - 44064584
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgca 325  Q
    |||||| || |||| ||||||||| |||||| |||||||||||||||| |  |||||| |||| |||||||||    
T  44064656 tttggcttttgcaccggtttccgacccaccaaaggtgagcgactaatccggttcatgcgtagaggcatgcgca 44064584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 47219258 - 47219182
Alignment:
Q  251 tctttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcact 327  Q
    |||||||| ||||||| ||||||||| ||| || |||||  ||||||||| | ||||||| |||| |||||||||||    
T  47219258 tctttggctttcgcaccggtttccgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcact 47219182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 49021198 - 49021274
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||||| ||||||  ||||  ||||||||| | ||||||| |||| |||||||||||||    
T  49021198 tttggctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactgg 49021274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 8164648 - 8164589
Alignment:
Q  270 tttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||||||||||| ||||| |||||||||| ||||| ||| || | |||||||||||||    
T  8164648 tttccgatccaccaaaggtgggcgactaatccgactcgtgcgtaaaggcatgcgcactgg 8164589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 2668166 - 2668085
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||| ||||| | |||| | ||||||||||||||||   ||| ||| |||| ||||||||||||| ||| |||||||    
T  2668166 ttcgcactgatttccaacccactaaaggtgagcgactaatccagctcttgcgtagaggcatgcgcactggccaagtgttgtt 2668085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 7328948 - 7328868
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||| ||| |||||| ||||| |||||||||| | ||||||| || | ||||||||||||| ||| |||||||    
T  7328948 ttcgcaccggttttcgacccaccaaaggtgggcgactaatccggctcatgcgta-aggcatgcgcactggccaagtgttgtt 7328868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 23511672 - 23511599
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    ||||||| ||||| ||| ||| || |||||  ||| ||||| ||||||||| |||| |||||||||||||||||    
T  23511672 ttcgcaccggttttcgacccatcaaaggtggacgattaatccgactcatgcgtagaggcatgcgcactggtcaa 23511599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 35316053 - 35315980
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||| |||||| | ||| ||||||||||   ||||||| |||| ||||||||||||| ||| |||||||    
T  35316053 ggtttccgacccaccaaaagtgggcgactaatccagctcatgcgtagaggcatgcgcactggccaagtgttgtt 35315980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 49198448 - 49198375
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| |||||||||  ||||  ||||||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  49198448 ggtttctgatccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 49198375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 51682956 - 51683029
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    ||||||||||||||||| ||||||  |||| |||||||||| | ||| ||   ||| |||||||||||||||||    
T  51682956 ttcgcactggtttccgacccaccattggtgggcgactaatccggctcgtgtggagaggcatgcgcactggtcaa 51683029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 7310698 - 7310786
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||  ||||||||| |||||| || ||||||||||||| | ||| ||| |||| |||||| ||| || ||| |||||||    
T  7310698 tttggctttcgcatcggtttccgacccaccaaagatgagcgactaatccggctcgtgcgtagaggcatgcacaccgggcaagtgttgtt 7310786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 32522077 - 32522005
Alignment:
Q  267 tggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttg 339  Q
    |||||||||| ||| || |||||  ||||||||||||||||||| || |  ||||||||| |||||| |||||    
T  32522077 tggtttccgacccatcaaaggtggacgactaatctgactcatgcgtaaatacatgcgcaccggtcaagtgttg 32522005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 678 - 597
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| |||||| |||||||||||||||||| ||||| | |||| |||||| ||||| |||| |||||||    
T  678 ttcgcaccggtttccgacccaccaaaggtgagcgactaatctggctcatacgtagaggcatgcacactgatcaagtgttgtt 597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 319537 - 319461
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||||  |||||| |||||  |||||||||   |||||||||||| | |||||||||||    
T  319537 tttggctttcgcaccggtttccgccccaccaaaggtggacgactaatccagctcatgcatagagggatgcgcactgg 319461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 12688 - 12608
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    |||||| ||||||| ||||||  ||||| || ||||| |||||||||| ||||||||| |||| |||||||||||||||||    
T  12688 tttggctttcgcaccggtttctaatccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaa 12608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 5253224 - 5253305
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| |||||| ||||| |||| ||||| | ||||||| |||| ||||||||||||| ||| |||||||    
T  5253224 ttcgcaccggtttccgacccaccaaaggtgggcgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 5253305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 9633619 - 9633695
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||||| |||||| ||||| |||||||||| | ||| ||| |||| |||||||||||||    
T  9633619 tttggctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactgg 9633695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 21898764 - 21898688
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||||| |||| | |||||| ||||||||| | ||||||| |||| |||||||||||||    
T  21898764 tttggctttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactgg 21898688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 30788847 - 30788923
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| ||||||| ||||||||| |||||| ||||| |||||||||| | ||| ||| |||| |||||||||||||    
T  30788847 tttggctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcctagaggcatgcgcactgg 30788923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 11142712 - 11142639
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaa 333  Q
    ||||||| ||| ||||| |||||| || ||  | ||||||||||||||||| |||| |||||||||||||||||    
T  11142712 ttcgcaccggtctccgacccaccaaagttggacaactaatctgactcatgcgtagaggcatgcgcactggtcaa 11142639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 13036005 - 13036086
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||||||   |||  ||||||||||| ||||||| |||| ||||||||||||| ||| |||||||    
T  13036005 ttcgcaccggtttccgacccaccaatagtggacgactaatctggctcatgcgtagaggcatgcgcactggccaagtgttgtt 13036086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 8938820 - 8938739
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| ||||||||| ||| || |||||  ||||||||  | ||||||| |||| || |||||||||||||| |||||||    
T  8938820 ttcgcaccggtttccgacccatcaaaggtggacgactaattcggctcatgcgtagatgcttgcgcactggtcaagtgttgtt 8938739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 30410546 - 30410473
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||||| |||||| || ||||||| |||||   ||||||| |||| |||||||||||||| || |||||||    
T  30410546 ggtttccgacccaccaaagatgagcgattaatccagctcatgcgtagaggcatgcgcactggttaagtgttgtt 30410473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 32157176 - 32157249
Alignment:
Q  268 ggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||||| || ||   |||||||||| ||||||| |||| | ||||||||||||||| |||||||    
T  32157176 ggtttctgatccaccaaagatggatgactaatctggctcatgcgtagaggtatgcgcactggtcaagtgttgtt 32157249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 8888997 - 8888922
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| |||||| |||||| ||||||| || |||||  ||||||||| ||||||||| |||| | |||||||||||    
T  8888997 tttggctttcgca-tggttttcgatccatcaaaggtggacgactaatccgactcatgcgtagaggtatgcgcactgg 8888922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 8932777 - 8932689
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||||| ||| || ||||| | || ||||| | ||||||| |||| ||||||||||| | ||| |||||||    
T  8932777 tttggctttcgcaccggtttccgacccatcaaaggtgggtgattaatccggctcatgcgtagaggcatgcgcactagccaagtgttgtt 8932689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 8944243 - 8944155
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||||| ||| || ||||| | || ||||| | ||||||| |||| ||||||||||| | ||| |||||||    
T  8944243 tttggctttcgcaccggtttccgacccatcaaaggtgggtgattaatccggctcatgcgtagaggcatgcgcactagccaagtgttgtt 8944155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 13469049 - 13468961
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    |||||| ||||||| ||||||| | ||||||  |||| |||||||||||| ||| ||| |||| ||||| ||||||  |||| ||||||    
T  13469049 tttggctttcgcaccggtttccaacccaccaatggtgggcgactaatctggctcgtgcgtagaggcatgtgcactgaccaatcgttgtt 13468961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 29444759 - 29444835
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    |||||| |||||||| |||||||| |||||| || ||  | ||||||| | ||||||| |||| |||||||||||||    
T  29444759 tttggctttcgcactagtttccgacccaccaaagatggacaactaatccggctcatgcgtagaggcatgcgcactgg 29444835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 1615 - 1684
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| ||||| ||| |||||| ||||| ||||||||| || ||||||| |||| |||||||||||||    
T  1615 ttcgcaccggttttcgacccaccaaaggtgggcgactaatttggctcatgcgtagaggcatgcgcactgg 1684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 25193 - 25112
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgttgtt 341  Q
    ||||||| |||||||||||||||| |||||  ||| |||||||| |||||| ||||  |||||||||||  ||| |||||||    
T  25193 ttcgcaccggtttccgatccaccaaaggtggacgattaatctgattcatgcgtagaaacatgcgcactgtccaaatgttgtt 25112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 338
Target Start/End: Original strand, 7829 - 7914
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactggtcaattgtt 338  Q
    |||||| |||| || |||||||||||||||| ||||| ||||||||||   || |||| |||| ||||||||||||| ||| ||||    
T  7829 tttggctttcgtaccggtttccgatccaccaaaggtgggcgactaatccagctaatgcgtagaggcatgcgcactggccaagtgtt 7914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 42833 - 42901
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactg 328  Q
    ||||||| ||||||||| |||||| ||||| |||||||||| | ||||||  |||| ||||||||||||    
T  42833 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactg 42901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 155705 - 155779
Alignment:
Q  253 tttggcattcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcact 327  Q
    |||||| ||||||| || |||||| |||||| ||||| |||||||||| | ||| ||| |||| |||||||||||    
T  155705 tttggctttcgcaccggcttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcact 155779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 250026 - 250095
Alignment:
Q  260 ttcgcactggtttccgatccaccagaggtgagcgactaatctgactcatgcatagacgcatgcgcactgg 329  Q
    ||||||| | ||||||| |||||| ||| |||||||||||| | ||| ||| |||| |||||||||||||    
T  250026 ttcgcaccgatttccgacccaccaaaggcgagcgactaatccggctcgtgcgtagaggcatgcgcactgg 250095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University