View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_4 (Length: 628)
Name: NF19782_high_4
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Original strand, 6490882 - 6491321
Alignment:
| Q |
16 |
ttcttgatgttgatactggtattattattacaaatcagaacttgatgtcttcgtttttgagagctgaactggttaccacaacatgtacaaggagttccgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490882 |
ttcttgatgttgatactggtattattattacaaatcagaacttgatgtcttcgtttttgagagctgaactggttaccacaacatgtacaaggagttccgt |
6490981 |
T |
|
| Q |
116 |
gacaccactctaaatggcgcagttgatctgatgtacaatgagacggcttcacgacatagggtctgtttcccctgcattcagattattaagactgccacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6490982 |
gacaccactctaaatggcgcagttgatctgatgtacaatgagacggcttcacgacatagggtttgtttcccctgcattcagattattaagactgccacca |
6491081 |
T |
|
| Q |
216 |
tcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagctcccattggttttcaagaaaatcacaccaccatccaaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
6491082 |
tcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagttcccattggttttcaagaaaatcacaccaccacccaaga |
6491181 |
T |
|
| Q |
316 |
agctgaagacaacatacaaggccaagaagccgaacttgtttatgtaatgtggtcgagtgatgaaagtatgttgggtttttccaaacattccagttgttta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6491182 |
agctgaagacaacatacaaggccaagaagccgaacttgtttatgtaatgtggtcgagtgatgaaagtatgttgggtttttccaaacattccagttgttta |
6491281 |
T |
|
| Q |
416 |
tctattaccagatttggccatgcggatctttagaccattc |
455 |
Q |
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| T |
6491282 |
tctattaccagattttgccatgcggatctttagaccattc |
6491321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 463 - 612
Target Start/End: Original strand, 6491368 - 6491522
Alignment:
| Q |
463 |
agtagaatcgaacaaatttataccaatttgcttgaaatttatcattatatcattttgttcacttcatatgga--------atgctcaaattagggacgac |
554 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
6491368 |
agtagaatcgaacaaatttataccaatttgcttgaaatttatcattatatcattttgttcacttcatatggaggatcaatatgctcaaattagg---gac |
6491464 |
T |
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| Q |
555 |
gacgacggtgaaaacattgttggataatactagaacccttgtgaaagaagttcatttt |
612 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6491465 |
gacgacggtgaatacattgttggataatactagaacccttgtgaaataagttcatttt |
6491522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 83 - 295
Target Start/End: Original strand, 41869759 - 41869970
Alignment:
| Q |
83 |
actggttaccacaacatgtacaaggagttccgtgacaccactctaaatggcgcagttgatctgatgtacaatgagacggcttcacgacatagggtctgtt |
182 |
Q |
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|||||||| ||||| ||||||||||| | |||||| || |||||||| || || || || |||||||| || | ||| || || ||||||||| | | |
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| T |
41869759 |
actggttatcacaatatgtacaaggaataccgtgatactactctaaacggtgctgtggagacaatgtacaacgaaatggcatctcgtcatagggtcagat |
41869858 |
T |
|
| Q |
183 |
tcccctgcattcagattattaagactgccaccatcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagctcccat |
282 |
Q |
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| || ||||| ||||| |||||||| |||||||||||||| || || ||||| ||||||||||| || || |||||| |||||||| |||||| |||| | |
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| T |
41869859 |
ttccttgcatccagatcattaagacggccaccatcccagctaatctgtgcaaaagggagagcactaagcagttccacaattccaaa-atcaagttcccct |
41869957 |
T |
|
| Q |
283 |
tggttttcaagaa |
295 |
Q |
| |
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|||| | |||||| |
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| T |
41869958 |
tggtgtacaagaa |
41869970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 75 - 363
Target Start/End: Original strand, 15297535 - 15297822
Alignment:
| Q |
75 |
agagctgaactggttaccacaacatgtacaaggagttccgtgacaccactctaaatggcgcagttgatctgatgtacaatgagacggcttcacgacatag |
174 |
Q |
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||||| |||| || || ||||||||||||||||| | ||| ||||| || ||||||||||| ||||| ||||||||||| | ||| ||||| ||||| |
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| T |
15297535 |
agagccgaaccggatatcacaacatgtacaaggaataccgcgacactacactaaatggcgctgttgaatacatgtacaatgaaatggcatcacgtcatag |
15297634 |
T |
|
| Q |
175 |
ggtctgtttcccctgcattcagattattaagactgccaccatcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaa |
274 |
Q |
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||| | || ||||| ||||| || ||||||||||| |||||||| || |||||||| ||||||||||| ||||| || ||| | || ||| ||||| |
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| T |
15297635 |
agtcaggcatccatgcatccagatcatcaagactgccacaatcccagctaacctttgcaaaagggagagcacgaaacagtttcacaactctaaa-atcaa |
15297733 |
T |
|
| Q |
275 |
gctcccattggttttcaagaaaatcacaccaccatccaagaagctgaagacaacatacaaggccaagaagccgaacttgtttatgtaat |
363 |
Q |
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| T |
15297734 |
gttcccgttggtgttcaagaagattaggcccccaaccaggaagctcaagacaacatacaaggcaacaaaacccaacatgtttatgtaat |
15297822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 83 - 360
Target Start/End: Original strand, 39709443 - 39709719
Alignment:
| Q |
83 |
actggttaccacaacatgtacaaggagttccgtgacaccactctaaatggcgcagttgatctgatgtacaatgagacggcttcacgacatagggtctgtt |
182 |
Q |
| |
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|||||||| ||||| ||||||||||| | |||||| || |||||||| ||||| || || |||||||| |||| ||| || || ||||||||| | | |
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| T |
39709443 |
actggttatcacaatatgtacaaggaataccgtgatactactctaaacggcgctgtggagacaatgtacaacgagatggcatctcgtcatagggtcaggt |
39709542 |
T |
|
| Q |
183 |
tcccctgcattcagattattaagactgccaccatcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagctcccat |
282 |
Q |
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| T |
39709543 |
ttccctgcattcaaatcattaagactgccaccatcccggctaatctgtgcaaaagggagagcactaagcagtttcacaattccaaa-atcaagttccctc |
39709641 |
T |
|
| Q |
283 |
tggttttcaagaaaatcacaccaccatccaagaagctgaagacaacatacaaggccaagaagccgaacttgtttatgt |
360 |
Q |
| |
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|||| | |||||| || | |||||| | | || || || ||||| ||||| ||||||||||| ||| ||||||||| |
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| T |
39709642 |
tggtgtacaagaagattaggccaccaactaggagcctaaaaacaacctacaaagccaagaagcccaacctgtttatgt |
39709719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 363
Target Start/End: Original strand, 39718196 - 39718370
Alignment:
| Q |
188 |
tgcattcagattattaagactgccaccatcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagctcccattggtt |
287 |
Q |
| |
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|||||||| || ||||||||||||||||||||||| || || ||||| || |||||||| || || || ||| |||||||| |||||| |||| |||| |
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| T |
39718196 |
tgcattcaaatcattaagactgccaccatcccagctaatctgtgcaaaagagagagcactaagcagtttcacaattccaaa-atcaagttccctctggtg |
39718294 |
T |
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| Q |
288 |
ttcaagaaaatcacaccaccatccaagaagctgaagacaacatacaaggccaagaagccgaacttgtttatgtaat |
363 |
Q |
| |
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| T |
39718295 |
tacaagaagattaggccaccaaccaggagcctcaaaacaacctacaaagctaagaagcccaacctgtttatgtaat |
39718370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 38699797 - 38699736
Alignment:
| Q |
18 |
cttgatgttgatactggtattattattacaaatcagaacttgatgtcttcgtttttgagagc |
79 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||| |
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| T |
38699797 |
cttgatgttgatactggtattattgttacaaaccagaacttgatgccttcgcttttgagagc |
38699736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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