View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_40 (Length: 323)
Name: NF19782_high_40
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 42183229 - 42182926
Alignment:
| Q |
10 |
aagaatatggggtgaaaagtggagtttgaatgaatttttt-gtctgctcattacatatata--atggtgcaaaaatgactcaaaacaacaacatatactc |
106 |
Q |
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| T |
42183229 |
aagaataaggggtgaaaagtggagtttgaatgaatttttttgtctgctcattacatatatataatggtgcaaaaatgactcaaaacaacaacatatactc |
42183130 |
T |
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| Q |
107 |
attatgaccaaacccactacaagtgttcaatttt-tataccctactcaaactatcatagagcaacttt-agttgcttctcaaattacaattatactaggc |
204 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42183129 |
attatgaccaaacccactacaagtgttcaattttgtataccctactcaaactatcatagagcaacttttagttgcttctcaaattacaattatactaggc |
42183030 |
T |
|
| Q |
205 |
actaaaactttgacttgagttttt-gaacttctatagactatagtttggcacttacgttagggtatggtttgtggagaatattatggtaatttgaagtac |
303 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42183029 |
actaaaactttgactgaagttttttgaacttctatagactatagtttggcacttacgttagggtatggtttgtggagaatattatggtaatttgaagtac |
42182930 |
T |
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| Q |
304 |
tact |
307 |
Q |
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|||| |
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| T |
42182929 |
tact |
42182926 |
T |
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