View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_42 (Length: 310)
Name: NF19782_high_42
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 8926373 - 8926113
Alignment:
| Q |
1 |
aacattagcaaaaagcctttaaacaacaaaacatatatatgcatgtttagaatcagagtgaacttaacgaggtgacacgacacatcgtgattctgtcaag |
100 |
Q |
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| T |
8926373 |
aacattagcaaaaagcctttaaacaacaaaacatatatatgcatgtttagaatcaaagtgaacttaacgaggtgacacgacacatcgtgattctgtcaag |
8926274 |
T |
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| Q |
101 |
ttcaccgttaatctaaacatgcac--------agagaaattttgatgatgtatagaactagcacctcaaagaagccccagttctcacaagcatctttgat |
192 |
Q |
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| T |
8926273 |
ttcaccgttaatctaaacatgcactgtattaaagagaaattttgatgatgtatagaactagtacctcaaagaagccccagttctcacaagcatctttgat |
8926174 |
T |
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| Q |
193 |
catctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactggaaag |
253 |
Q |
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| T |
8926173 |
catctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactggaaag |
8926113 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 252
Target Start/End: Complemental strand, 55522810 - 55522713
Alignment:
| Q |
155 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactggaaa |
252 |
Q |
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| T |
55522810 |
acctcaaagaaaccccaattttcacaagcatcttttatgatctccatggttgatgctttctcttcagtgttaagattcttcatgtcaactactggaaa |
55522713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 37628757 - 37628696
Alignment:
| Q |
155 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctc |
216 |
Q |
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| T |
37628757 |
acctcaaagaatccccagttttcacaagcatccttgattttctccatagtagcttttctctc |
37628696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 36872707 - 36872765
Alignment:
| Q |
155 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttct |
213 |
Q |
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| T |
36872707 |
acctcaaagaatccccaattctcacaagcatccttaattttctccatggtatcttttct |
36872765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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