View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_47 (Length: 306)
Name: NF19782_high_47
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 22272728 - 22272635
Alignment:
| Q |
11 |
taattctatattgtcattatatgaactacaattcgacactacattttatgttgcattttcaagttgctttgaccagagtctgcattgacacttc |
104 |
Q |
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| T |
22272728 |
taattccatattgtcattatatgaactacaattagacactacattttatgttgcattttcaagttgctttgaccagagtctgcattgacacttc |
22272635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 22266267 - 22266185
Alignment:
| Q |
119 |
atttgtagctcatcaaactatatccaagaccaaaatacaaattttggtcactccaaatcagtttcagaatgaacaaagaaaag |
201 |
Q |
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| T |
22266267 |
atttttagctcatcaaactatatccaaaaccgaaatacagattttggtcactccaaatcagtttgagaatgaacaaagaaaag |
22266185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 22266185 - 22266123
Alignment:
| Q |
228 |
gaacaaaaaacaacaaatgcaatactaagcacaataaaatcatgaaggtatgcgaaatcatat |
290 |
Q |
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| T |
22266185 |
gaacaaaaaacaacaagtgcaatgctaagcacaatcagatcatgaaggtatgcgaaatcatat |
22266123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 18665242 - 18665291
Alignment:
| Q |
55 |
tttatgttgcattttcaagttgctttgaccagagtctgcattgacacttc |
104 |
Q |
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||||||||||||||| ||||| ||||||||| |||| |||||||||||| |
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| T |
18665242 |
tttatgttgcattttgaagtttctttgaccaaagtcctcattgacacttc |
18665291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 15078586 - 15078537
Alignment:
| Q |
55 |
tttatgttgcattttcaagttgctttgaccagagtctgcattgacacttc |
104 |
Q |
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||||||||||||||| ||||| ||||||||| |||| |||||||||||| |
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| T |
15078586 |
tttatgttgcattttgaagtttctttgaccaaagtcctcattgacacttc |
15078537 |
T |
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