View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19782_high_48 (Length: 300)

Name: NF19782_high_48
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19782_high_48
NF19782_high_48
[»] chr2 (10 HSPs)
chr2 (12-149)||(30973014-30973151)
chr2 (210-279)||(30972884-30972953)
chr2 (15-128)||(17270500-17270613)
chr2 (10-113)||(13231926-13232029)
chr2 (64-146)||(16341442-16341524)
chr2 (15-80)||(33855006-33855071)
chr2 (15-91)||(5370929-5371005)
chr2 (10-118)||(24576828-24576937)
chr2 (13-80)||(27466485-27466552)
chr2 (15-79)||(34063512-34063576)
[»] chr7 (15 HSPs)
chr7 (25-146)||(40504395-40504516)
chr7 (15-149)||(16299499-16299632)
chr7 (23-116)||(5048350-5048443)
chr7 (15-116)||(20176435-20176536)
chr7 (35-116)||(9260540-9260621)
chr7 (35-116)||(9309673-9309754)
chr7 (210-279)||(16254003-16254072)
chr7 (23-80)||(16259185-16259242)
chr7 (21-80)||(19196866-19196925)
chr7 (25-87)||(29541334-29541396)
chr7 (83-147)||(16254135-16254199)
chr7 (15-91)||(23104525-23104601)
chr7 (215-251)||(40504586-40504622)
chr7 (23-96)||(7229501-7229574)
chr7 (15-79)||(19589938-19590002)
[»] chr3 (12 HSPs)
chr3 (15-111)||(3285464-3285560)
chr3 (15-113)||(3257940-3258038)
chr3 (15-91)||(3404377-3404453)
chr3 (35-110)||(32201881-32201956)
chr3 (210-279)||(16217405-16217474)
chr3 (210-261)||(32202052-32202103)
chr3 (15-145)||(4776652-4776781)
chr3 (23-112)||(16217218-16217307)
chr3 (15-91)||(3404637-3404713)
chr3 (24-91)||(3412993-3413060)
chr3 (15-113)||(3389173-3389271)
chr3 (219-279)||(4781151-4781210)
[»] chr4 (10 HSPs)
chr4 (23-146)||(11488380-11488502)
chr4 (23-116)||(9274511-9274604)
chr4 (23-146)||(7703318-7703440)
chr4 (210-279)||(8913103-8913172)
chr4 (23-86)||(10180139-10180202)
chr4 (23-116)||(19940116-19940209)
chr4 (43-139)||(8913243-8913339)
chr4 (12-115)||(41953453-41953556)
chr4 (31-91)||(12109148-12109208)
chr4 (210-279)||(11488566-11488635)
[»] chr1 (6 HSPs)
chr1 (15-95)||(19882159-19882238)
chr1 (15-146)||(15245100-15245231)
chr1 (23-90)||(26661348-26661415)
chr1 (23-80)||(17597477-17597534)
chr1 (12-115)||(33079636-33079738)
chr1 (15-85)||(39439747-39439817)
[»] chr5 (5 HSPs)
chr5 (23-116)||(24884172-24884265)
chr5 (210-275)||(24884358-24884423)
chr5 (17-91)||(13808010-13808084)
chr5 (31-116)||(18787853-18787938)
chr5 (23-115)||(16511950-16512042)
[»] chr8 (3 HSPs)
chr8 (17-112)||(25234538-25234633)
chr8 (30-90)||(7636091-7636151)
chr8 (46-113)||(12566287-12566354)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 30973151 - 30973014
Alignment:
Q  12 aatactatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctat 111  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||| |||||||||| | | |||||||||||||||    
T  30973151 aatactatgagtattttaaggtggaaaggctaagtgcaagtatacactgcaaaagttatagtataaaaagatatcgatcccatagagactgtggagctat 30973052  T
Q  112 agctttgcgtagcttttctgcagaaaacgtgtttggag 149  Q
     ||||||||||||||||||||||||||| |||||||||    
T  30973051 ggctttgcgtagcttttctgcagaaaacatgtttggag 30973014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 30972953 - 30972884
Alignment:
Q  210 gttaaagtctttagaaaatctaaagatgaaaagtgtggtttagaacaaggtttaattatgataaaacatt 279  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30972953 gttaaagtctttagaaaatctcaagatgaaaagtgtggttttgaacaaggtttaattatgataaaacatt 30972884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 17270613 - 17270500
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagc 114  Q
    ||||||| ||||||||||| |||| | | |||||||||||||| | |  ||||||||||||||||| |||| ||||  ||| |||| ||||||||||||     
T  17270613 actatgagtattttaaggtagaaatattgagtgcaagtatacaatgtttaagttatagtataaaaagatattgatctcacagagaccgtggagctatagt 17270514  T
Q  115 tttgcgtagctttt 128  Q
    || |||||||||||    
T  17270513 ttcgcgtagctttt 17270500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 13231926 - 13232029
Alignment:
Q  10 ataatactatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagct 109  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||||||||    | ||||||||||||||| ||||  || | |||  ||||||||||||    
T  13231926 ataacactatgagtattttaaggtggaaagagtaagtgcaagtatacacttcttaggttatagtataaaaagatattaattccacaaggactgtggagct 13232025  T
Q  110 atag 113  Q
    ||||    
T  13232026 atag 13232029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 16341442 - 16341524
Alignment:
Q  64 aagttatagtataaaaatatatcgatcctacataga-ctgtggagctatagctttgcgtagcttttctgcagaaaacgtgtttg 146  Q
    |||||||| |||||||| ||||| |||| ||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||    
T  16341442 aagttataatataaaaagatatctatcccaca-agagctgtggagctatagcttcgtgtagcttttctgcagaaaacgtgtttg 16341524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 33855006 - 33855071
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaa 80  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||| |  |||||||||||||||||    
T  33855006 actatgagtattttaagatggaaagacttagtgcaagtatacactgtctaagttatagtataaaaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 5371005 - 5370929
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcc 91  Q
    ||||||| |||||||| ||||||||||| |||||||||||||| | |  ||||||||||||||||| ||||| ||||    
T  5371005 actatgactattttaaagtggaaagactgagtgcaagtatacaatgttcaagttatagtataaaaagatatcaatcc 5370929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 24576937 - 24576828
Alignment:
Q  10 ataatactatgaatatttta-aggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagc 108  Q
    |||||||||||| ||||||  ||||  ||||| ||||||||||||||||||||  || ||||| |||||||| |||| ||||| | |  |||| ||||||    
T  24576937 ataatactatgagtattttggaggtaaaaagattaagtgcaagtatacactatccaaattataatataaaaagatattgatcccatagggactatggagc 24576838  T
Q  109 tatagctttg 118  Q
    ||||||||||    
T  24576837 tatagctttg 24576828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 27466485 - 27466552
Alignment:
Q  13 atactatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaa 80  Q
    |||||||||| |||  | |||||||||||||||||||| |||||||| |  |||||||| ||||||||    
T  27466485 atactatgaacattcaagggtggaaagactaagtgcaattatacactctccaagttataatataaaaa 27466552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 34063576 - 34063512
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaa 79  Q
    ||||||| | |||||| ||||||||||| | |||||||||||| | |  ||||||||||||||||    
T  34063576 actatgagtgttttaatgtggaaagactgaatgcaagtatacattgtccaagttatagtataaaa 34063512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 40504395 - 40504516
Alignment:
Q  25 ttttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctttgcgtagc 124  Q
    |||||||||| ||||||||||| |||||||||| | |  |||||||| |||||||| |||||||||| |||| | ||||||||||||||||| || ||||    
T  40504395 ttttaaggtgaaaagactaagtacaagtatacaatgtttaagttataatataaaaagatatcgatcccacatggtctgtggagctatagcttcgcatagc 40504494  T
Q  125 ttttctgcagaaaacgtgtttg 146  Q
    ||||| ||||||||| ||||||    
T  40504495 ttttcagcagaaaacttgtttg 40504516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 16299499 - 16299632
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagc 114  Q
    ||||||| ||||||||| || ||| |||||||||||||||| |||||  || |||| |||||||||  ||| ||||| |||| || |||||||||| |||    
T  16299499 actatgagtattttaagatgtaaa-actaagtgcaagtataaactatccaatttattgtataaaaagttattgatcccacatggattgtggagctacagc 16299597  T
Q  115 tttgcgtagcttttctgcagaaaacgtgtttggag 149  Q
    || |||||||||||| ||||||||| |||||||||    
T  16299598 ttcgcgtagcttttcagcagaaaacttgtttggag 16299632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 5048350 - 5048443
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctt 116  Q
    ||||||||||| |||||||| ||||||| ||| || | |  |||||||| || ||||| |||||||||| ||| ||||||||||||||||||||    
T  5048350 tattttaaggtagaaagactgagtgcaattatgcattgtccaagttatactacaaaaagatatcgatcccacaaagactgtggagctatagctt 5048443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 20176536 - 20176435
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagc 114  Q
    ||||||| ||||||||| || ||||||| ||| |||| ||||||| |  ||||||||||||||||| |||||||||  |||  ||||| |||||||||||    
T  20176536 actatgagtattttaagatgaaaagactgagttcaaggatacactgtccaagttatagtataaaaagatatcgatctcacagggactggggagctatagc 20176437  T
Q  115 tt 116  Q
    ||    
T  20176436 tt 20176435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 9260621 - 9260540
Alignment:
Q  35 gaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctt 116  Q
    ||||||| ||||||||||||| | | |  ||||||||||||||||| |||||||||| |||  || ||||||||||||||||    
T  9260621 gaaagacaaagtgcaagtatataatgtccaagttatagtataaaaagatatcgatcccacagggattgtggagctatagctt 9260540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 9309673 - 9309754
Alignment:
Q  35 gaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctt 116  Q
    ||||||| ||||||||||||| | | |  ||||||||||||||||| |||||||||| |||  || ||||||||||||||||    
T  9309673 gaaagacaaagtgcaagtatataatgtccaagttatagtataaaaagatatcgatcccacagggattgtggagctatagctt 9309754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 16254072 - 16254003
Alignment:
Q  210 gttaaagtctttagaaaatctaaagatgaaaagtgtggtttagaacaaggtttaattatgataaaacatt 279  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||| | ||||| |  ||||||||||||||    
T  16254072 gttaaagtctttagaaaatctcaagatgaaaattgtagtttagatctaggttcagctatgataaaacatt 16254003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 16259242 - 16259185
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaa 80  Q
    ||||||||| || |||||||||||||||||||||||| |  |||||||||||||||||    
T  16259242 tattttaagatgtaaagactaagtgcaagtatacactgtccaagttatagtataaaaa 16259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 19196925 - 19196866
Alignment:
Q  21 aatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaa 80  Q
    |||||||||||||||||| ||| |||||||||||||||| |  ||||| |||||||||||    
T  19196925 aatattttaaggtggaaaaacttagtgcaagtatacactgtctaagttgtagtataaaaa 19196866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 29541334 - 29541396
Alignment:
Q  25 ttttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcg 87  Q
    |||||||||||||| | | |||||||||||||||| |  ||||||||||||||||| ||||||    
T  29541334 ttttaaggtggaaaaattgagtgcaagtatacactgtgtaagttatagtataaaaagatatcg 29541396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 16254199 - 16254135
Alignment:
Q  83 tatcgatcctacatagactgtggagctatagctttgcgtagcttttctgcagaaaacgtgtttgg 147  Q
    ||||||||| |||| || ||||||||||||||| |||||||||||||  | |||||| |||||||    
T  16254199 tatcgatcccacatggattgtggagctatagctctgcgtagcttttcaacggaaaacttgtttgg 16254135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 23104601 - 23104525
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcc 91  Q
    ||||||| ||||||||| |||| ||||| | |||||||||||||  |  ||||||||||||||||| ||||| ||||    
T  23104601 actatgagtattttaagatggagagacttaatgcaagtatacaccgtccaagttatagtataaaaagatatcaatcc 23104525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 40504586 - 40504622
Alignment:
Q  215 agtctttagaaaatctaaagatgaaaagtgtggttta 251  Q
    |||||||||||||||| ||||||||||||||||||||    
T  40504586 agtctttagaaaatctcaagatgaaaagtgtggttta 40504622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 7229574 - 7229501
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacat 96  Q
    |||||||||||| |||||||  ||||||||||||| | |  |||| |||||||||||| |||| ||||| ||||    
T  7229574 tattttaaggtgaaaagactttgtgcaagtatacattgtccaagtaatagtataaaaagatattgatcccacat 7229501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 19590002 - 19589938
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaa 79  Q
    ||||||| ||||| | |||| |||||||  ||||||||||||||| |  ||||||||||||||||    
T  19590002 actatgagtatttaagggtgaaaagactgggtgcaagtatacactgtccaagttatagtataaaa 19589938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 3285560 - 3285464
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctat 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||| |||||||||| |||  || |||||||||||    
T  3285560 actatgagtattttaaggtggaaagactaagtgcaagtatacactttccaagttatagtataaaaagatatcgatccaacagggattgtggagctat 3285464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 3258038 - 3257940
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatag 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | |  |||||||| ||||||||  ||||||||| |||| || |||||||||||||    
T  3258038 actatgagtattttaaggtggaaagactaagtgcaagtatacaattttcaagttataatataaaaaggtatcgatccaacatggattgtggagctatag 3257940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 3404453 - 3404377
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcc 91  Q
    ||||||| |||||| ||||||||||||| |||||||||||||| | | | ||||||||||||||||||||| |||||    
T  3404453 actatgagtatttttaggtggaaagactgagtgcaagtatacattgttatagttatagtataaaaatatattgatcc 3404377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 32201881 - 32201956
Alignment:
Q  35 gaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagcta 110  Q
    ||||| ||||||||||||||||||| |  ||||||||||| ||||| |||||||||| |||| |||||||||||||    
T  32201881 gaaagtctaagtgcaagtatacactgtccaagttatagtacaaaaaaatatcgatcccacatggactgtggagcta 32201956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 16217405 - 16217474
Alignment:
Q  210 gttaaagtctttagaaaatctaaagatgaaaagtgtggtttagaacaaggtttaattatgataaaacatt 279  Q
    ||||||||||||||||||||| |||||| || ||| |||||||||||||||| ||| || ||||||||||    
T  16217405 gttaaagtctttagaaaatctcaagatggaaggtgcggtttagaacaaggttcaatcatcataaaacatt 16217474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 32202052 - 32202103
Alignment:
Q  210 gttaaagtctttagaaaatctaaagatgaaaagtgtggtttagaacaaggtt 261  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  32202052 gttaaagtctttagaaaatctcaagatggaaggtgtggtttagaacaaggtt 32202103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 4776781 - 4776652
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagc 114  Q
    ||||||| |||||||||| ||||||||| | | ||||||||||  ||  ||||||||||||||||| |||| || || |||  || |||||||||| |||    
T  4776781 actatgagtattttaagggggaaagactgaattcaagtatacaacattcaagttatagtataaaaagatattga-cccacaaggattgtggagctaaagc 4776683  T
Q  115 tttgcgtagcttttctgcagaaaacgtgttt 145  Q
    || | |||||| ||| | ||||||| |||||    
T  4776682 ttcgtgtagctgttcagtagaaaacatgttt 4776652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 16217218 - 16217307
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctata 112  Q
    ||||||||| | |||| | |||| |||||||||||  ||  ||||||||||||||| | ||||| |||| |||| |||||||||||||||    
T  16217218 tattttaagattgaaaaattaagcgcaagtatacatcatccaagttatagtataaacagatatcaatcccacatggactgtggagctata 16217307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 3404713 - 3404637
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcc 91  Q
    ||||||| |||||||||||||||||||| ||| |||||||||| | |   ||||||||| |||||| ||||| ||||    
T  3404713 actatgagtattttaaggtggaaagactgagtccaagtatacattgtcctagttatagtctaaaaaaatatctatcc 3404637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 3413060 - 3412993
Alignment:
Q  24 attttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcc 91  Q
    ||||||||||||||||||| ||| |||||||||| |||   ||||||||| |||||| ||||| ||||    
T  3413060 attttaaggtggaaagactgagtacaagtatacattatcctagttatagtctaaaaaaatatctatcc 3412993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 3389271 - 3389173
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatag 113  Q
    ||||||| |||||||||   ||||||||||||||||||||||| | |   ||||||||| |||||  ||||| |||| | |  ||||||||||||||||    
T  3389271 actatgagtattttaagtaagaaagactaagtgcaagtatacattgtcctagttatagtctaaaataatatctatccaagagggactgtggagctatag 3389173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 4781210 - 4781151
Alignment:
Q  219 tttagaaaatctaaagatgaaaagtgtggtttagaacaaggtttaattatgataaaacatt 279  Q
    ||||||||||||||||||| ||||| ||||||| ||| ||||| | |||| ||||||||||    
T  4781210 tttagaaaatctaaagatggaaagtctggttta-aactaggttcagttatcataaaacatt 4781151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 11488380 - 11488502
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctttgcgta 122  Q
    |||||||||||||||||| | ||  ||||||||||||||  ||||||| |||||||||||||||||||| |||  |||| |||||||||||||| |||||    
T  11488380 tattttaaggtggaaagattgaggtcaagtatacactatcgaagttat-gtataaaaatatatcgatcccacaaggactatggagctatagcttcgcgta 11488478  T
Q  123 gcttttctgcagaaaacgtgtttg 146  Q
     |||||  ||| ||||| ||||||    
T  11488479 cctttttagcaaaaaacttgtttg 11488502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 9274604 - 9274511
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctt 116  Q
    ||||||||| | |||||||||||||||||||||||||||  || ||  |||||||||| |||||||||| | ||||||| ||||||||||||||    
T  9274604 tattttaagattgaaagactaagtgcaagtatacactatccaaattcaagtataaaaagatatcgatcccatatagactatggagctatagctt 9274511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 7703440 - 7703318
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctttgcgta 122  Q
    |||||||||||||| ||||| |||||||||||||||| |  ||||||||||||||||| |||| |||   |||| || |||||||||||||||| | |||    
T  7703440 tattttaaggtggacagactcagtgcaagtatacactgtccaagttatagtataaaaa-atattgatttcacatggaatgtggagctatagcttcgtgta 7703342  T
Q  123 gcttttctgcagaaaacgtgtttg 146  Q
    ||||||| | ||||| | ||||||    
T  7703341 gcttttcaggagaaagcttgtttg 7703318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 8913172 - 8913103
Alignment:
Q  210 gttaaagtctttagaaaatctaaagatgaaaagtgtggtttagaacaaggtttaattatgataaaacatt 279  Q
    ||||||||| ||||||||||| |||||| || |||||||||||||||||||| | | |||||||||||||    
T  8913172 gttaaagtccttagaaaatctcaagatggaaggtgtggtttagaacaaggttcagtcatgataaaacatt 8913103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 10180202 - 10180139
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatc 86  Q
    |||||||| ||||||||||||||| ||||||||||||||  || |||||||||||||| |||||    
T  10180202 tattttaaagtggaaagactaagttcaagtatacactatccaaattatagtataaaaagatatc 10180139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 19940116 - 19940209
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctt 116  Q
    |||||||||||||||||| | |||||||||||| | | |  ||||||||||||||||| ||||  |||  |||  |||||||||||||||||||    
T  19940116 tattttaaggtggaaagattgagtgcaagtatatattgtctaagttatagtataaaaagatattaatctcacaaggactgtggagctatagctt 19940209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 8913339 - 8913243
Alignment:
Q  43 aagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctttgcgtagcttttctgcagaaaac 139  Q
    ||||||||||||||||| |  ||||||| ||||||||| |||||||||| |||  |||||||| |||||| |||    ||||||||| |||||||||    
T  8913339 aagtgcaagtatacactgtccaagttatggtataaaaagatatcgatcccacagggactgtggcgctataacttgaaatagcttttcagcagaaaac 8913243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 41953453 - 41953556
Alignment:
Q  12 aatactatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctat 111  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||| | |  |||||||||| |||||  ||||| |||  |||  ||||| ||||||||    
T  41953453 aatactatgagtattttaagatggaaagacttggtgcaagtatacattgtccaagttatagtttaaaataatatcaatctcacagggactggggagctat 41953552  T
Q  112 agct 115  Q
    ||||    
T  41953553 agct 41953556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 12109148 - 12109208
Alignment:
Q  31 ggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcc 91  Q
    |||||||||| |||||||||||||||| | |  |||||||| |||||||| ||||||||||    
T  12109148 ggtggaaagattaagtgcaagtatacattgtccaagttataatataaaaagatatcgatcc 12109208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 11488566 - 11488635
Alignment:
Q  210 gttaaagtctttagaaaatctaaagatgaaaagtgtggtttagaacaaggtttaattatgataaaacatt 279  Q
    |||||||||  | |||||||| |||||| |||| |||||||||| | ||||| || ||||||||||||||    
T  11488566 gttaaagtccatcgaaaatctcaagatggaaagcgtggtttagatctaggttcaagtatgataaaacatt 11488635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 19882159 - 19882238
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctaca 95  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |  ||| |||||| |||||| ||||||||||||||    
T  19882159 actatgagtattttaaggtggaaagactaagtgcaagtatacactgtccaagctatagtctaaaaa-atatcgatcctaca 19882238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 15245231 - 15245100
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagc 114  Q
    |||||| |||||| | |||||||||| |||||||||||||||||  |  ||||||||| ||||||| |||||||||| ||||||||||  |||||||| |    
T  15245231 actatgtatatttaagggtggaaagattaagtgcaagtatacacggtccaagttatagcataaaaagatatcgatcccacatagactgatgagctataac 15245132  T
Q  115 tttgcgtagcttttctgcagaaaacgtgtttg 146  Q
    ||    ||||||| | ||||||||| ||||||    
T  15245131 ttcttatagctttccagcagaaaacttgtttg 15245100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 26661415 - 26661348
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatc 90  Q
    ||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||    
T  26661415 tattttaagatggaaagacttagtgcaagtatacactatccaagttatagtataaaaagatatcgatc 26661348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 17597534 - 17597477
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaa 80  Q
    ||||||||| | ||||||||||||||||||||||| |||  |||||||||||||||||    
T  17597534 tattttaagattgaaagactaagtgcaagtatacattatccaagttatagtataaaaa 17597477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 33079738 - 33079636
Alignment:
Q  12 aatactatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctat 111  Q
    |||||||||| |||||||||||||||  | | ||||||||||| ||||||  |||||||| |||||||| ||| |||| | |||| ||||  ||||||||    
T  33079738 aatactatgagtattttaaggtggaataatttagtgcaagtatgcactatccaagttatattataaaaagataacgattccacatggact-aggagctat 33079640  T
Q  112 agct 115  Q
    ||||    
T  33079639 agct 33079636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 39439747 - 39439817
Alignment:
Q  15 actatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatat 85  Q
    ||||||| ||||||||||||||||   | |||||||||||||||| |  ||||||||||||||||| ||||    
T  39439747 actatgagtattttaaggtggaaatgttgagtgcaagtatacactgtccaagttatagtataaaaaaatat 39439817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 24884172 - 24884265
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctt 116  Q
    ||||||||| | ||||||||||||||||||||||||     ||||||||  ||||||| || ||||||| |||  |||||||||||||||||||    
T  24884172 tattttaagattgaaagactaagtgcaagtatacaccgcccaagttatataataaaaaaatttcgatcccacagggactgtggagctatagctt 24884265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 24884358 - 24884423
Alignment:
Q  210 gttaaagtctttagaaaatctaaagatgaaaagtgtggtttagaacaaggtttaattatgataaaa 275  Q
    ||||||||||||||||||||| |||||| ||  ||||||||||||| |||||||| | ||||||||    
T  24884358 gttaaagtctttagaaaatctcaagatggaagatgtggtttagaactaggtttaactttgataaaa 24884423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 13808010 - 13808084
Alignment:
Q  17 tatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcc 91  Q
    ||||| ||||||||| |||||||||| |||||||||||||| | |  | |||||| |||||||| |||| |||||    
T  13808010 tatgagtattttaagatggaaagacttagtgcaagtatacattgtccaggttataatataaaaagatattgatcc 13808084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 18787938 - 18787853
Alignment:
Q  31 ggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagctt 116  Q
    |||||||  ||| |||||||||| ||||  |  ||||||||||||| ||| ||||||||||  ||| |||||||| ||||||||||    
T  18787938 ggtggaataactgagtgcaagtaaacacattctaagttatagtatagaaagatatcgatcccgcatggactgtggtgctatagctt 18787853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 16512042 - 16511950
Alignment:
Q  23 tattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatagct 115  Q
    |||||||||||| ||||||| |||||||||||||| | |  || |||||| ||||| | |||| ||| | ||| ||||||  |||||||||||    
T  16512042 tattttaaggtgaaaagacttagtgcaagtatacaatgtccaaattataggataaacaaatattgattcaacagagactgaagagctatagct 16511950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 25234633 - 25234538
Alignment:
Q  17 tatgaatattttaaggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctata 112  Q
    ||||| ||||||||| |||||||||| ||  |||||||||| | |  || |||||||||||||| |||| ||||| |||  |||||||||||||||    
T  25234633 tatgagtattttaagctggaaagacttaggtcaagtatacattgtccaatttatagtataaaaagatattgatcccacagggactgtggagctata 25234538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 7636151 - 7636091
Alignment:
Q  30 aggtggaaagactaagtgcaagtatacactataaaagttatagtataaaaatatatcgatc 90  Q
    |||||||| ||||||||||||||||||| ||   ||||||| ||||||||| |||||||||    
T  7636151 aggtggaatgactaagtgcaagtatacaataatcaagttattgtataaaaaaatatcgatc 7636091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 12566287 - 12566354
Alignment:
Q  46 tgcaagtatacactataaaagttatagtataaaaatatatcgatcctacatagactgtggagctatag 113  Q
    ||||||||||||||||  |||||||| ||||||||  |||| ||||| ||| |||||||| |||||||    
T  12566287 tgcaagtatacactatccaagttataatataaaaagttatcaatccttcatggactgtggcgctatag 12566354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University