View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19782_high_52 (Length: 277)
Name: NF19782_high_52
Description: NF19782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19782_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 5607737 - 5607986
Alignment:
| Q |
18 |
ttttcaacttgcttgttctgtatgatgtcctaaatcattctcaaccagctgctccatcacatgattatcctactcttcaaaattagattgatacaagctg |
117 |
Q |
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| T |
5607737 |
ttttcaacttgcttgttctgtctgatgtcctaaatcattctcaaccagctgctccatcacatgattatcctactcttcaaaattagattgatacaagctg |
5607836 |
T |
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| Q |
118 |
cgtagcactgacacttcagattgaatgtgtctgatgtctaaaatgtgttggtgtccgacactgggcaccgtcacatgtgattaccttcattcnnnnnnnn |
217 |
Q |
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| T |
5607837 |
cgtagcactgacacttcagattgaatgtgtctggtgtctaaaatgtgtcggtgtccgacaccgggcaccgtcgcatgtgattactttcattctttttatt |
5607936 |
T |
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| Q |
218 |
nnnnaattcattactagtctcagagcgtagggttggtgtctgtgtctgtg |
267 |
Q |
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| T |
5607937 |
ttttaattcattactagtgttggagcgtagggttggtgtctgtgtatgtg |
5607986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 5588237 - 5588173
Alignment:
| Q |
16 |
cattttcaacttgcttgttctgtatgatgtcctaaatcattctcaaccagctgctccatcacatg |
80 |
Q |
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| T |
5588237 |
cattttcaatctgcttgttctgtatgatgtcctaaatcattctcaagctgctgctccatcacatg |
5588173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 5593198 - 5593134
Alignment:
| Q |
16 |
cattttcaacttgcttgttctgtatgatgtcctaaatcattctcaaccagctgctccatcacatg |
80 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
5593198 |
cattttcaatctgcttgttctgtatgatgtcctaaatcattctcaagctgctgctccatcacatg |
5593134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 3580560 - 3580588
Alignment:
| Q |
119 |
gtagcactgacacttcagattgaatgtgt |
147 |
Q |
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| T |
3580560 |
gtagcactgacacttcagattgaatgtgt |
3580588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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